# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1twiA	434	2.80e-31	b.49.2.3,c.1.6.1	107399,107400
2o0tA	467	6.12e-31		
2qghA	425	5.59e-30		
2p3eA	420	3.56e-29		
2j66A	428	9.20e-29		
2yxxA	386	1.83e-28		
2pljA	419	1.36e-27		
2nvaA	372	2.16e-27		
1knwA	425	2.94e-27	b.49.2.3,c.1.6.1	90969,90970
7odcA	424	2.17e-26	b.49.2.3,c.1.6.1	26488,28650
3gwqA	426	4.45e-19		
3llxA	376	6.02e-19		
1xfcA	384	2.37e-18		
2dy3A	361	1.08e-17		
3kw3A	376	3.78e-17		
1rcqA	357	8.68e-17	b.49.2.2,c.1.6.1	104882,104883
1bd0A	388	1.22e-16	b.49.2.2,c.1.6.1	26480,28642
1vfsA	386	2.80e-16	b.49.2.2,c.1.6.1	108584,108585
3hurA	395	7.65e-16		
2vd8A	391	1.34e-15		
3co8A	380	4.62e-15		
3e6eA	371	7.93e-15		
1w8gA	234	5.30e-06		
3cpgA	282	3.62e-05		
1ct5A	256	0.002031	c.1.6.2	28663
3lhlA	287	1.651		
1qtwA	285	2.327	c.1.15.1	29392
1nvmA	345	3.460	a.5.7.1,c.1.10.5	86249,86250
1m5wA	243	4.292	c.1.24.1	84836
2ef5A	290	5.066		
3ciwA	348	5.762		
2v82A	212	7.439		
2o7sA	523	8.094		
2gptA	523	8.474		
1tv8A	340	10.26	c.1.28.3	107352
1n7kA	234	10.28	c.1.10.1	85374
1tx2A	297	11.82	c.1.21.1	107420
2yr1A	257	13.89		
2qw5A	335	14.40		
3hjvA	312	15.36		
2nvwA	479	16.12	c.2.1.3,d.81.1.5	138665,138666
2wklA	497	16.14		
1p1xA	260	16.84	c.1.10.1	104060
1vbjA	281	17.12		
1xi3A	215	17.57	c.1.3.1	109601
2fliA	220	18.47	c.1.2.2	133714
2v3gA	283	18.50	c.1.8.3	152457
2kksA	146	18.94		
3k13A	300	19.63		
2citA	282	20.20	c.1.8.3	130499
1mzhA	225	20.96	c.1.10.1	79698
3cqjA	295	21.52		
3ju2A	284	22.07		
1ps9A	671	22.68	c.1.4.1,c.3.1.1,c.4.1.1	95076,95077,95078
1h1yA	228	23.10	c.1.2.2	76506
3hm7A	448	23.27		
1vc4A	254	23.75	c.1.2.4	100557
3canA	182	25.14		
3i6iA	346	26.00		
2pc8A	400	26.08		
2pajA	492	28.04	b.92.1.4,c.1.9.9	149344,149345
1qo2A	241	28.84	c.1.2.1	28533
2zdsA	340	33.59		
3kwsA	287	33.74		
3iixA	348	34.36		
2g0wA	296	34.70	c.1.15.4	134503
1xyzA	347	35.59	c.1.8.3	28804
2ho3A	325	35.94		
2wnwA	447	36.39		
1sflA	238	37.34	c.1.10.1	112077
3gg7A	254	38.05		
2q02A	272	39.65	c.1.15.4	149978
1mi3A	322	43.13	c.1.7.1	91274
2j6vA	301	46.36		
3gtfA	337	46.44		
2fb2A	340	47.55		
2r47A	157	47.80		
1mxsA	225	49.73	c.1.10.1	91494
1r9lA	309	49.88	c.94.1.1	97262
1a53A	247	50.33	c.1.2.4	28564
3figA	646	50.63		
3igsA	232	51.30		
1y9aA	360	51.50		
2cuyA	305	52.38		
1eyeA	280	53.00	c.1.21.1	29672
3f7jA	276	53.26		
2dzxA	248	53.30		
1tqjA	230	54.62	c.1.2.2	107228
2v3fA	505	55.38	b.71.1.2,c.1.8.3	152453,152454
2a0mA	316	57.88	c.42.1.1	125960
1xzoA	174	57.98	c.47.1.10	122474
3lmzA	257	58.11		
3e38A	343	59.71		
2i9uA	439	60.46	b.92.1.4,c.1.9.9	147572,147573
2i57A	438	61.31		
2nx9A	464	61.74		
1zzmA	259	65.26	c.1.9.12	125911
3igzB	561	65.84		
3hv8A	268	67.88		
1ub3A	220	68.11	c.1.10.1	88395
3ewyA	260	69.41		
2depA	356	70.71		
1hw6A	278	72.61	c.1.7.1	61296
3fdkA	323	73.31		
2zayA	147	74.43		
3hv9A	265	75.05		
3labA	217	75.59		
1aq0A	306	76.55	c.1.8.3	28842
2qulA	290	77.96		
3ewwA	260	79.54		
1sznA	417	79.68	b.71.1.1,c.1.8.1	106162,106163
1pj5A	830	80.61	b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
3g8rA	350	80.88		
1ad2A	228	82.00	e.24.1.1	43353
1a53	247	82.01		
3f4cA	332	82.90		
3m0zA	249	83.74		
3m7wA	255	84.37		
2v1xA	591	85.29		
2cw6A	298	86.35		
3m0oA	389	88.57		
1r85A	379	88.85	c.1.8.3	104839
2zcuA	286	89.55		
3mmzA	176	89.78