# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1twiA	434	1.34e-31	b.49.2.3,c.1.6.1	107399,107400
2o0tA	467	3.19e-31		
2qghA	425	4.71e-30		
2p3eA	420	2.61e-29		
2j66A	428	9.42e-29		
2yxxA	386	1.24e-28		
2pljA	419	1.51e-27		
1knwA	425	1.74e-27	b.49.2.3,c.1.6.1	90969,90970
2nvaA	372	3.44e-27		
7odcA	424	6.90e-27	b.49.2.3,c.1.6.1	26488,28650
3llxA	376	9.11e-19		
3gwqA	426	9.64e-19		
1xfcA	384	1.31e-18		
2dy3A	361	6.89e-18		
1vfsA	386	1.15e-17	b.49.2.2,c.1.6.1	108584,108585
1rcqA	357	1.96e-17	b.49.2.2,c.1.6.1	104882,104883
3kw3A	376	3.66e-17		
3hurA	395	3.34e-16		
1bd0A	388	9.25e-16	b.49.2.2,c.1.6.1	26480,28642
2vd8A	391	1.19e-15		
3co8A	380	2.26e-15		
3e6eA	371	5.60e-15		
1w8gA	234	9.63e-06		
3cpgA	282	0.002350		
1ct5A	256	0.003983	c.1.6.2	28663
3lhlA	287	3.108		
1qtwA	285	3.319	c.1.15.1	29392
3jzmA	519	5.629		
2pajA	492	6.306	b.92.1.4,c.1.9.9	149344,149345
2q02A	272	7.362	c.1.15.4	149978
1m5wA	243	8.047	c.1.24.1	84836
3ciwA	348	10.01		
2kksA	146	10.93		
2gptA	523	12.81		
2g0wA	296	13.28	c.1.15.4	134503
1tv8A	340	16.73	c.1.28.3	107352
2ef5A	290	17.10		
2v82A	212	19.52		
2rebA	352	22.45	c.37.1.11,d.48.1.1	32282,38767
2o7sA	523	22.53		
1nvmA	345	22.95	a.5.7.1,c.1.10.5	86249,86250
3canA	182	25.47		
1pj5A	830	28.03	b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
2wklA	497	29.05		
3m1rA	322	29.90		
2heuA	401	30.54		
3lmzA	257	31.72		
3cvuA	543	32.25		
2csgA	424	34.60	b.82.2.12	130768
2v3gA	283	35.08	c.1.8.3	152457
3elfA	349	35.55		
3fdkA	323	35.58		
3hm7A	448	37.49		
1a53	247	37.67		
3hv8A	268	39.89		
1ps9A	671	40.54	c.1.4.1,c.3.1.1,c.4.1.1	95076,95077,95078
1wvgA	359	41.90	c.2.1.2	121339
1p1mA	406	42.21	b.92.1.4,c.1.9.9	87696,87697
3guvA	167	45.15		
3dc8A	490	47.84		
3hjvA	312	49.82		
3m7wA	255	52.55		
3kwsA	287	52.77		
3dtyA	398	52.92		
1y44A	320	53.47	d.157.1.7	122608
3cnyA	301	55.08		
3lnpA	468	55.28		
3hv9A	265	56.66		
2i57A	438	57.13		
2de6A	392	57.90	b.33.1.2,d.129.3.3	131415,131416
3fwzA	140	58.09		
3lb0A	276	58.58		
3eywA	413	58.60		
3cqjA	295	59.74		
3igzB	561	61.94		
3htwA	328	61.96		
3c0qA	301	62.24		
1yx1A	264	62.76	c.1.15.7	124169
2fliA	220	63.08	c.1.2.2	133714
3iixA	348	63.51		
1xi3A	215	64.06	c.1.3.1	109601
1vc4A	254	64.10	c.1.2.4	100557
2csuA	457	66.25	c.2.1.8,c.23.4.1,c.23.4.1	130781,130782,130783
2dzxA	248	69.89		
2a0mA	316	71.35	c.42.1.1	125960
3l23A	303	72.17		
2fiqA	420	72.25	c.1.10.7	133527
2zklA	369	73.00		
2b76A	602	73.21	a.7.3.1,c.3.1.4,d.168.1.1	128009,128010,128011
1u94A	356	74.19	c.37.1.11,d.48.1.1	107743,107744
2d5bA	500	74.54	a.27.1.1,c.26.1.1	131268,131269
2vvmA	495	76.79		
3gg7A	254	79.56		
3gsiA	827	79.70		
2wk1A	282	81.82		
2w0mA	235	82.07		
1z41A	338	83.86	c.1.4.1	124421
3f7jA	276	85.73		
1kewA	361	86.04	c.2.1.2	68544
3f4cA	332	87.68