# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 7.84e-32 b.49.2.3,c.1.6.1 107399,107400 2o0tA 467 4.53e-31 2qghA 425 4.67e-30 2p3eA 420 4.96e-29 2yxxA 386 2.17e-28 2j66A 428 2.29e-28 2pljA 419 2.45e-27 2nvaA 372 3.26e-27 1knwA 425 3.56e-27 b.49.2.3,c.1.6.1 90969,90970 7odcA 424 1.65e-26 b.49.2.3,c.1.6.1 26488,28650 3gwqA 426 1.43e-18 3llxA 376 2.40e-18 1xfcA 384 3.78e-18 1rcqA 357 1.74e-17 b.49.2.2,c.1.6.1 104882,104883 2dy3A 361 1.82e-17 1vfsA 386 4.97e-17 b.49.2.2,c.1.6.1 108584,108585 3kw3A 376 1.04e-16 1bd0A 388 3.51e-16 b.49.2.2,c.1.6.1 26480,28642 3hurA 395 9.58e-16 2vd8A 391 3.11e-15 3co8A 380 5.69e-15 3e6eA 371 1.27e-14 1w8gA 234 1.64e-05 3cpgA 282 0.001671 1ct5A 256 0.007827 c.1.6.2 28663 1qtwA 285 3.036 c.1.15.1 29392 2q02A 272 4.119 c.1.15.4 149978 1pj5A 830 4.120 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1z45A 699 4.470 b.30.5.4,c.2.1.2 124427,124428 2pajA 492 4.884 b.92.1.4,c.1.9.9 149344,149345 3jzmA 519 4.935 1m5wA 243 6.371 c.1.24.1 84836 3ciwA 348 7.361 2g0wA 296 8.771 c.1.15.4 134503 1qo8A 566 9.558 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2gptA 523 10.97 2kksA 146 11.74 1ps9A 671 11.94 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2wklA 497 13.02 2b76A 602 15.76 a.7.3.1,c.3.1.4,d.168.1.1 128009,128010,128011 3cqjA 295 15.91 2rebA 352 16.16 c.37.1.11,d.48.1.1 32282,38767 1tv8A 340 16.20 c.1.28.3 107352 2p0oA 372 16.74 1mdbA 539 17.43 e.23.1.1 79008 2bs3A 656 18.26 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2heuA 401 18.75 2napA 723 21.22 b.52.2.2,c.81.1.1 26926,35334 3lmzA 257 22.40 3canA 182 23.17 1ud2A 480 26.61 b.71.1.1,c.1.8.1 88469,88470 2vjxA 846 26.90 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 2v3gA 283 28.05 c.1.8.3 152457 3eywA 413 28.14 1p49A 562 29.28 c.76.1.2 94089 1n62B 809 29.53 d.41.1.1,d.133.1.1 80092,80093 3elfA 349 29.53 2ef5A 290 30.03 1y44A 320 30.89 d.157.1.7 122608 2fliA 220 32.10 c.1.2.2 133714 1tedA 393 32.12 c.95.1.2 106807 2e7zA 727 32.13 2fiqA 420 32.44 c.1.10.7 133527 3hv9A 265 32.74 3cvuA 543 32.91 3c4nA 405 33.82 3etcA 580 34.90 2i9uA 439 35.44 b.92.1.4,c.1.9.9 147572,147573 3lhlA 287 35.65 1qwkA 317 35.87 c.1.7.1 96482 2zklA 369 38.83 3m1rA 322 40.13 2fsvA 384 40.77 c.2.1.4,c.23.12.2 134037,134038 1p1mA 406 41.52 b.92.1.4,c.1.9.9 87696,87697 3cnyA 301 42.22 3kwsA 287 42.35 3lb8A 436 42.40 3hv8A 268 42.56 2zxiA 637 44.97 1ei6A 406 45.55 c.76.1.4 90443 1nvmA 345 45.66 a.5.7.1,c.1.10.5 86249,86250 2v6oA 596 46.71 2v3aA 384 48.87 3dc8A 490 48.93 2o7sA 523 49.22 2vvmA 495 51.59 3gxpA 398 52.46 2wyhA 923 54.28 1u94A 356 54.35 c.37.1.11,d.48.1.1 107743,107744 2dzxA 248 55.16 3bijA 285 55.97 1r9lA 309 56.05 c.94.1.1 97262 3f7jA 276 56.25 3lnpA 468 56.41 1auk 489 56.57 2qw5A 335 56.92 1xp8A 366 57.40 c.37.1.11,d.48.1.1 115735,115736 2i57A 438 57.92 1c7sA 858 59.34 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1a53 247 59.51 3c3bA 420 59.76 2citA 282 59.93 c.1.8.3 130499 1zedA 484 60.15 c.76.1.1 124980 3iixA 348 61.18 2w0mA 235 61.92 2wk1A 282 62.01 2d5bA 500 62.37 a.27.1.1,c.26.1.1 131268,131269 2v82A 212 62.91 2x59A 761 62.92 1yx1A 264 63.84 c.1.15.7 124169 1sb8A 352 64.14 c.2.1.2 105410 3buvA 326 64.76 1xi3A 215 65.49 c.1.3.1 109601 1x9mA 698 66.10 c.55.3.5,e.8.1.1 114999,115000 1y3nA 490 66.14 c.94.1.1 122597 1xovA 326 67.21 b.34.11.4,c.56.5.6 122206,122207 2zdsA 340 69.05 3fwzA 140 69.80 2vr4A 846 70.71 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153495,153496,153497,153498,153499 2wm5A 435 70.93 2v3fA 505 71.64 b.71.1.2,c.1.8.3 152453,152454 2jlqA 451 71.87 1vemA 516 72.86 b.3.1.1,c.1.8.1 120021,120022 2dy1A 665 72.86 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 146607,146608,146609,146610,146611 2w91A 653 73.05 2c5aA 379 73.08 c.2.1.2 129894 1wvgA 359 73.12 c.2.1.2 121339 3lb0A 276 73.71 3l23A 303 73.92 3if2A 444 74.21 1yt8A 539 76.29 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2je8A 848 76.97 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 147998,147999,148000,148001,148002 3g7sA 549 77.37 3m7wA 255 77.56 2wnsA 205 78.31 2v1xA 591 78.51 3ju2A 284 80.76 3bvxA 1045 82.95 a.8.3.1,b.30.5.6,c.6.2.1 155676,155677,155678 1j4aA 333 84.62 c.2.1.4,c.23.12.1 71502,71503 3lufA 259 85.12 3bq5A 766 85.55 1ni5A 433 86.12 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2bcgG 453 86.13 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 2pgfA 371 87.12 3k1qC 1196 88.75 2vtvA 342 89.56