# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1twiA	434	1.13e-30	b.49.2.3,c.1.6.1	107399,107400
2o0tA	467	2.28e-30		
2qghA	425	2.69e-29		
2p3eA	420	1.58e-28		
2j66A	428	5.06e-28		
2yxxA	386	8.34e-28		
2pljA	419	7.33e-27		
1knwA	425	8.10e-27	b.49.2.3,c.1.6.1	90969,90970
2nvaA	372	1.66e-26		
7odcA	424	3.01e-26	b.49.2.3,c.1.6.1	26488,28650
3gwqA	426	1.81e-18		
3llxA	376	2.57e-18		
1xfcA	384	3.54e-18		
2dy3A	361	1.59e-17		
1vfsA	386	3.53e-17	b.49.2.2,c.1.6.1	108584,108585
1rcqA	357	4.44e-17	b.49.2.2,c.1.6.1	104882,104883
3kw3A	376	1.10e-16		
3hurA	395	5.75e-16		
2vd8A	391	1.64e-15		
1bd0A	388	1.93e-15	b.49.2.2,c.1.6.1	26480,28642
3co8A	380	4.43e-15		
3e6eA	371	1.05e-14		
1w8gA	234	1.09e-05		
3cpgA	282	0.002726		
1ct5A	256	0.003637	c.1.6.2	28663
1qtwA	285	4.694	c.1.15.1	29392
3jzmA	519	6.528		
3lhlA	287	6.666		
2pajA	492	6.836	b.92.1.4,c.1.9.9	149344,149345
2q02A	272	8.096	c.1.15.4	149978
1m5wA	243	9.280	c.1.24.1	84836
2kksA	146	10.47		
2ef5A	290	10.74		
1tv8A	340	11.34	c.1.28.3	107352
2rebA	352	14.65	c.37.1.11,d.48.1.1	32282,38767
3ciwA	348	18.77		
3lmzA	257	18.84		
2g0wA	296	19.02	c.1.15.4	134503
2gptA	523	19.63		
3cvuA	543	21.10		
1nvmA	345	22.11	a.5.7.1,c.1.10.5	86249,86250
2v82A	212	23.62		
3canA	182	24.11		
2fliA	220	28.02	c.1.2.2	133714
2o7sA	523	28.89		
2v3gA	283	30.65	c.1.8.3	152457
3m1rA	322	31.54		
3hv8A	268	32.04		
2csgA	424	32.54	b.82.2.12	130768
1u94A	356	34.46	c.37.1.11,d.48.1.1	107743,107744
2i57A	438	35.59		
1yx1A	264	36.63	c.1.15.7	124169
1a53	247	38.22		
3hm7A	448	38.95		
2heuA	401	39.67		
1pj5A	830	41.71	b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
1xi3A	215	41.79	c.1.3.1	109601
2wklA	497	41.90		
2w0mA	235	42.20		
1p1mA	406	45.15	b.92.1.4,c.1.9.9	87696,87697
3fwzA	140	46.21		
3fdkA	323	46.59		
3hv9A	265	46.73		
3guvA	167	46.75		
1wvgA	359	48.27	c.2.1.2	121339
3enkA	341	51.59		
3dc8A	490	52.65		
3kwsA	287	53.44		
3elfA	349	55.72		
2dzxA	248	55.97		
3m7wA	255	57.54		
3cqjA	295	58.27		
3lb0A	276	59.49		
1vc4A	254	61.20	c.1.2.4	100557
2a0mA	316	61.29	c.42.1.1	125960
2wk1A	282	61.44		
2de6A	392	61.86	b.33.1.2,d.129.3.3	131415,131416
1y44A	320	64.01	d.157.1.7	122608
1ps9A	671	65.43	c.1.4.1,c.3.1.1,c.4.1.1	95076,95077,95078
2fb2A	340	65.49		
3igzB	561	66.40		
3lnpA	468	66.63		
3gg7A	254	66.86		
1kewA	361	67.11	c.2.1.2	68544
1wohA	305	69.02	c.42.1.1	109446
1xp8A	366	70.43	c.37.1.11,d.48.1.1	115735,115736
3figA	646	71.98		
3eywA	413	73.48		
3mmzA	176	74.60		
2nvwA	479	74.77	c.2.1.3,d.81.1.5	138665,138666
1xwyA	264	74.80	c.1.9.12	122411
2citA	282	75.10	c.1.8.3	130499
3htwA	328	76.75		
1a53A	247	79.71	c.1.2.4	28564
1tqjA	230	80.31	c.1.2.2	107228
3f7jA	276	80.69		
3c4vA	426	82.33		
2gblA	519	82.88	c.37.1.11,c.37.1.11	134911,134912
3ju2A	284	82.96		
2qzsA	485	84.20		
3lufA	259	84.89		
2c5aA	379	87.83	c.2.1.2	129894
1g67A	225	88.34	c.1.3.1	60311
1sflA	238	89.97	c.1.10.1	112077