# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 1.09e-43 b.49.2.3,c.1.6.1 107399,107400 2o0tA 467 7.37e-43 2qghA 425 8.37e-42 2p3eA 420 5.59e-40 2yxxA 386 1.84e-39 2j66A 428 4.02e-39 1knwA 425 8.56e-38 b.49.2.3,c.1.6.1 90969,90970 2pljA 419 1.02e-37 2nvaA 372 4.15e-37 7odcA 424 9.21e-37 b.49.2.3,c.1.6.1 26488,28650 3llxA 376 5.62e-26 3gwqA 426 1.16e-25 1xfcA 384 9.42e-25 1rcqA 357 3.49e-24 b.49.2.2,c.1.6.1 104882,104883 2dy3A 361 6.39e-24 3kw3A 376 2.17e-23 1vfsA 386 6.06e-23 b.49.2.2,c.1.6.1 108584,108585 3hurA 395 1.12e-22 2vd8A 391 4.01e-22 1bd0A 388 1.86e-21 b.49.2.2,c.1.6.1 26480,28642 3co8A 380 3.15e-21 3e6eA 371 2.09e-20 1w8gA 234 5.93e-07 1ct5A 256 0.000173 c.1.6.2 28663 3cpgA 282 0.000177 1qtwA 285 3.500 c.1.15.1 29392 3lhlA 287 4.206 2kksA 146 5.107 2ef5A 290 10.23 3jzmA 519 10.27 3gsiA 827 10.43 1p1mA 406 11.28 b.92.1.4,c.1.9.9 87696,87697 1ps9A 671 11.90 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1m5wA 243 11.97 c.1.24.1 84836 2zklA 369 13.19 2pajA 492 13.65 b.92.1.4,c.1.9.9 149344,149345 2v3gA 283 13.67 c.1.8.3 152457 3figA 646 15.01 2heuA 401 16.07 1y44A 320 16.26 d.157.1.7 122608 2qw5A 335 17.16 2q02A 272 17.61 c.1.15.4 149978 1tedA 393 21.17 c.95.1.2 106807 2zxiA 637 21.55 2csgA 424 21.66 b.82.2.12 130768 3kwsA 287 22.34 1tv8A 340 22.71 c.1.28.3 107352 1pj5A 830 24.38 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 3hv8A 268 24.42 3eywA 413 25.09 1wohA 305 25.91 c.42.1.1 109446 3m0oA 389 26.75 3cvuA 543 26.91 2wklA 497 27.90 2de6A 392 28.34 b.33.1.2,d.129.3.3 131415,131416 3mmzA 176 28.46 2i9uA 439 33.50 b.92.1.4,c.1.9.9 147572,147573 1ei6A 406 33.64 c.76.1.4 90443 2v82A 212 35.15 3hjvA 312 35.52 2c2nA 339 37.73 2wm5A 435 38.08 1r9lA 309 39.38 c.94.1.1 97262 3ib7A 330 39.85 2f7fA 494 40.00 c.1.17.1,d.41.2.1 133088,133089 2gptA 523 40.83 3hv9A 265 40.99 2fctA 313 42.05 b.82.2.9 133282 2g0wA 296 42.94 c.1.15.4 134503 2w1kA 252 43.01 2nvwA 479 43.67 c.2.1.3,d.81.1.5 138665,138666 2w0mA 235 43.74 2rebA 352 45.42 c.37.1.11,d.48.1.1 32282,38767 2gagB 405 46.22 1xi3A 215 46.93 c.1.3.1 109601 2wk1A 282 46.99 2q4zA 312 47.00 2jlqA 451 51.32 1auk 489 54.93 2v1xA 591 56.41 2i57A 438 59.45 1k0iA 394 60.41 c.3.1.2,d.16.1.2 67942,67943 2rcaA 292 60.97 3g7sA 549 61.33 1h6vA 499 61.98 c.3.1.5,c.3.1.5,d.87.1.1 60693,60694,60695 3lufA 259 64.32 2vvmA 495 64.80 2h1yA 321 64.90 1kewA 361 66.32 c.2.1.2 68544 3ewyA 260 66.97 2v6oA 596 67.20 1aq0A 306 67.37 c.1.8.3 28842 1z2wA 192 68.12 d.159.1.7 124390 1y0pA 571 69.00 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2axqA 467 69.85 1o7qA 289 70.31 c.68.1.9 92626 3icjA 534 71.47 3bxzA 471 72.35 2olnA 397 73.49 3c96A 415 73.55 c.3.1.2,d.16.1.2 156122,156123 1mla 309 74.78 1qzzA 374 74.87 a.4.5.29,c.66.1.12 96719,96720 2gf3A 389 75.06 c.3.1.2,d.16.1.3 135070,135071 2r47A 157 78.74 2v6eA 558 79.39 2cvhA 220 82.33 1o7nA 449 85.09 b.33.1.2,d.129.3.3 81162,81163 2fr7A 412 85.80 3cqjA 295 86.81 2f4nA 273 88.14 3fwzA 140 88.84 1lfkA 398 89.38 a.104.1.1 77926 1fp2A 352 89.68 a.4.5.29,c.66.1.12 59941,59942 1mkyA 439 89.87 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252