# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 3.03e-36 b.49.2.3,c.1.6.1 107399,107400 2o0tA 467 1.91e-35 2qghA 425 1.05e-34 2yxxA 386 4.87e-33 2p3eA 420 8.78e-33 2j66A 428 9.14e-33 1knwA 425 1.78e-31 b.49.2.3,c.1.6.1 90969,90970 2nvaA 372 4.29e-31 2pljA 419 6.94e-31 7odcA 424 4.06e-30 b.49.2.3,c.1.6.1 26488,28650 3llxA 376 7.20e-22 3gwqA 426 6.41e-21 1xfcA 384 6.43e-20 2dy3A 361 2.39e-19 1rcqA 357 1.18e-18 b.49.2.2,c.1.6.1 104882,104883 3kw3A 376 2.72e-18 1vfsA 386 1.18e-17 b.49.2.2,c.1.6.1 108584,108585 2vd8A 391 1.42e-17 3hurA 395 1.77e-17 1bd0A 388 3.41e-17 b.49.2.2,c.1.6.1 26480,28642 3co8A 380 9.06e-17 3e6eA 371 2.55e-16 1w8gA 234 8.30e-07 3cpgA 282 0.000101 1ct5A 256 0.000197 c.1.6.2 28663 3lhlA 287 1.374 2wnwA 447 1.607 2wklA 497 2.080 1tv8A 340 3.577 c.1.28.3 107352 2gptA 523 3.612 2kksA 146 4.809 2ef5A 290 4.971 3a63A 365 5.590 2v3fA 505 6.165 b.71.1.2,c.1.8.3 152453,152454 1m5wA 243 7.630 c.1.24.1 84836 2ho3A 325 8.038 3hjvA 312 8.100 1ps9A 671 9.399 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2qw5A 335 9.416 2o7sA 523 14.05 1nvmA 345 14.53 a.5.7.1,c.1.10.5 86249,86250 1qtwA 285 16.45 c.1.15.1 29392 1z7bA 358 16.74 c.2.1.2 124599 3k89A 314 18.74 3ciwA 348 19.62 2nx9A 464 19.85 2f7fA 494 21.98 c.1.17.1,d.41.2.1 133088,133089 3enkA 341 22.82 1p1xA 260 22.92 c.1.10.1 104060 1f9vA 347 24.20 c.37.1.9 59745 2nt0A 497 25.10 b.71.1.2,c.1.8.3 138561,138562 1wy5A 317 25.16 c.26.2.5,d.229.1.1 121428,121429 2z1mA 345 30.64 2v82A 212 31.58 1hrkA 359 31.79 c.92.1.1 61228 2h1yA 321 34.17 1p1mA 406 36.36 b.92.1.4,c.1.9.9 87696,87697 1gca 309 37.01 3il3A 323 37.08 2v3gA 283 37.64 c.1.8.3 152457 3a1nA 317 38.23 3ib7A 330 38.28 2pc8A 400 41.04 2citA 282 41.78 c.1.8.3 130499 1vc4A 254 42.68 c.1.2.4 100557 1vjzA 341 43.23 c.1.8.3 100838 3iarA 367 43.85 3g87A 394 44.08 2nvwA 479 44.71 c.2.1.3,d.81.1.5 138665,138666 3gnlA 244 44.73 2wvgA 568 47.83 1ja1A 622 47.85 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 3igsA 232 48.21 1t71A 281 48.24 d.159.1.9 112283 2cuyA 305 48.76 1xi3A 215 49.35 c.1.3.1 109601 3m1rA 322 49.93 2fb2A 340 53.13 3hr4A 219 53.20 3l55A 353 53.35 3kl4A 433 54.57 3gg7A 254 54.70 3gxpA 398 54.81 2q02A 272 54.97 c.1.15.4 149978 3f4dA 332 55.54 3iipA 256 56.44 1kewA 361 57.67 c.2.1.2 68544 3iivA 263 59.33 1edgA 380 59.88 c.1.8.3 28807 1ur4A 399 60.36 c.1.8.3 113402 1i60A 278 61.29 c.1.15.4 71118 3lkbA 392 65.03 3fnbA 405 65.76 2i9uA 439 67.84 b.92.1.4,c.1.9.9 147572,147573 2i57A 438 68.00 3ju2A 284 68.26 1eceA 358 68.43 c.1.8.3 28813 2vefA 314 71.29 3lmzA 257 74.42 3f4cA 332 74.68 3gtfA 337 75.10 1oltA 457 75.72 c.1.28.2 93334 2wk1A 282 76.25 3g8rA 350 77.68 1aq0A 306 77.74 c.1.8.3 28842 1vflA 356 81.04 c.1.9.1 120041 1mxsA 225 81.34 c.1.10.1 91494 1xzoA 174 81.93 c.47.1.10 122474 3lopA 364 83.70 2h9aA 445 86.44 2i2xB 258 87.57 2c5aA 379 87.61 c.2.1.2 129894 2cbiA 594 88.36 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181