# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 1.94e-16 b.49.2.3,c.1.6.1 107399,107400 2qghA 425 7.60e-16 2p3eA 420 8.49e-16 2j66A 428 3.71e-15 2o0tA 467 4.17e-15 2nvaA 372 2.39e-14 2yxxA 386 4.80e-14 1knwA 425 8.84e-14 b.49.2.3,c.1.6.1 90969,90970 2pljA 419 2.26e-13 7odcA 424 4.20e-13 b.49.2.3,c.1.6.1 26488,28650 3gwqA 426 1.06e-06 3llxA 376 1.37e-06 2dy3A 361 3.47e-06 1rcqA 357 4.81e-06 b.49.2.2,c.1.6.1 104882,104883 1xfcA 384 8.80e-06 1vfsA 386 9.70e-06 b.49.2.2,c.1.6.1 108584,108585 3kw3A 376 1.42e-05 1bd0A 388 2.16e-05 b.49.2.2,c.1.6.1 26480,28642 2vd8A 391 4.68e-05 3e6eA 371 6.88e-05 3hurA 395 9.60e-05 3co8A 380 0.000126 1w8gA 234 0.5451 3cpgA 282 0.7335 3cw9A 504 0.9069 e.23.1.1 157035 1mdbA 539 1.153 e.23.1.1 79008 3dhvA 512 1.265 3fceA 512 2.168 2v7bA 529 3.833 3e7wA 511 4.636 1ct5A 256 5.727 c.1.6.2 28663 1t5hX 504 5.738 e.23.1.1 106449 3g7sA 549 6.420 3etcA 580 7.533 1tv8A 340 9.273 c.1.28.3 107352 1amuA 563 9.776 e.23.1.1 43351 1z45A 699 11.33 b.30.5.4,c.2.1.2 124427,124428 3iieA 401 11.67 1q0qA 406 11.71 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2bfgA 503 12.22 b.71.1.2,c.1.8.3 128423,128424 1up7A 417 12.69 c.2.1.5,d.162.1.2 113374,113375 1jvsA 400 13.66 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 3fefA 450 14.23 2jg2A 422 17.34 2axqA 467 18.67 1li4A 432 18.99 c.2.1.4,c.23.12.3 84616,84617 2fb2A 340 19.57 3iesA 551 20.53 3a2bA 398 21.12 3d3aA 612 21.29 1o69A 394 22.78 c.67.1.4 92560 3a63A 365 23.02 1p2hA 571 24.25 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2w8tA 427 25.16 1u8xX 472 26.10 c.2.1.5,d.162.1.2 107741,107742 3iteA 562 26.16 1r0kA 388 26.66 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1v25A 541 26.69 e.23.1.1 108275 1dv1A 449 27.20 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2hj0A 519 29.24 3a1nA 317 29.69 3do5A 327 30.12 1ygyA 529 30.47 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 3iplA 501 30.52 3h14A 391 31.77 2q1sA 377 32.32 2p0oA 372 32.42 3mggA 276 32.47 2x8uA 412 32.70 3cbfA 397 33.34 1eg5A 384 35.71 c.67.1.3 34429 3iahA 256 36.59 3gu3A 284 37.34 2cyaA 364 37.73 1ooyA 481 38.77 c.124.1.3,c.124.1.2 93388,93389 3idaA 587 39.14 1qo8A 566 39.68 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2x42A 721 40.80 1y0pA 571 41.01 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2x41A 721 41.79 1wkyA 464 41.81 b.18.1.31,c.1.8.3 120992,120993 2d1sA 548 41.89 1p3wA 404 43.50 c.67.1.3 87752 4uagA 437 45.12 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1s6yA 450 46.07 c.2.1.5,d.162.1.2 105314,105315 1vl2A 421 46.71 c.26.2.1,d.210.1.1 108708,108709 1bs0A 384 46.83 c.67.1.4 34490 1yovA 537 47.12 c.111.1.2 123785 2p1mB 594 47.14 1b5pA 385 47.91 c.67.1.1 90403 3getA 365 49.88 2b8nA 429 50.75 c.118.1.1 128093 3k5iA 403 51.16 1q1rA 431 51.72 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1qtqA 553 52.08 b.53.1.2,c.26.1.1 26940,31579 1f2dA 341 52.32 c.79.1.1 35298 2yrxA 451 52.44 1v2dA 381 53.23 c.67.1.1 108281 3g49A 277 53.92 3g1uA 437 55.23 3b8xA 390 55.30 2v74B 346 55.37 2jfgA 445 55.82 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 3i1jA 247 55.98 3lp8A 442 56.19 3abiA 365 56.83 2a4kA 263 57.10 c.2.1.2 126156 1uc8A 280 57.60 c.30.1.6,d.142.1.7 99165,99166 2v3gA 283 57.82 c.1.8.3 152457 2fb9A 322 58.20 2w70A 449 58.44 2z9wA 392 58.82 2z83A 459 58.86 3glqA 494 59.14 1xgkA 352 60.56 c.2.1.2 115286 2glxA 332 61.53 1fmtA 314 62.04 b.46.1.1,c.65.1.1 25758,34174 1vjtA 483 62.18 c.2.1.5,d.162.1.2 100833,100834 1korA 400 62.48 c.26.2.1,d.210.1.1 72824,72825 3gwzA 369 63.67 3iv6A 261 64.23 2bs9A 503 64.69 b.71.1.2,c.1.8.3 129062,129063 3gozA 362 64.99 1xr4A 509 65.88 c.124.1.2,c.124.1.2 115860,115861 1cs1A 386 66.21 c.67.1.3 34399 2gh1A 301 67.45 c.66.1.49 135170 1xeaA 323 67.59 c.2.1.3,d.81.1.5 109572,109573 3h2sA 224 67.59 3d3kA 259 68.08 3ceaA 346 70.89 2j5bA 348 70.97 1ff9A 450 71.62 c.2.1.3,d.81.1.2 30039,39954 1y8cA 246 71.90 c.66.1.43 116563 3fkdA 350 71.92 3b3fA 341 72.26 2ho3A 325 72.45 3kpiA 434 73.25 2h7mA 269 73.76 c.2.1.2 136219 3lwbA 373 74.27 2c4nA 250 74.61 c.108.1.14 129837 2z1aA 552 74.67 d.114.1.1,d.159.1.2 153927,153928 1pg4A 652 75.33 e.23.1.1 88067 2nx9A 464 75.60 1ju3A 583 76.17 b.18.1.13,c.69.1.21 67300,67301 1z1bA 356 76.60 d.10.1.4,d.163.1.1 124346,124347 1kpgA 287 77.17 c.66.1.18 68735 2cycA 375 77.63 2exxA 306 77.67 3i6iA 346 78.72 1l1eA 287 80.75 c.66.1.18 73454 1ja9A 274 80.86 c.2.1.2 62817 1ju2A 536 80.88 c.3.1.2,d.16.1.1 77169,77170 3kpkA 434 81.37 2ixaA 444 81.97 2cybA 323 81.99 2bw0A 329 82.19 b.46.1.1,c.65.1.1 129303,129304 1yqzA 438 82.36 1dv2A 452 82.62 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2jlqA 451 83.02 2h88A 621 83.15 3ei9A 432 83.35 3dwfA 278 83.56 3kxwA 590 83.80 2fuvA 549 84.03 2gjlA 328 84.69 2zyjA 397 85.01 3b46A 447 87.92 2pb2A 420 88.76 1auk 489 88.93 3ef6A 410 89.11 2tpt 440 89.38 2bs2A 660 89.51 a.7.3.1,c.3.1.4,d.168.1.1 129030,129031,129032 1k6xA 352 89.63 c.2.1.2 68238