# List of top-scoring protein chains for T0547.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2p3eA	420	1.40e-40		
1tufA	434	3.94e-39	b.49.2.3,c.1.6.1	107335,107336
1twiA	434	3.94e-39	b.49.2.3,c.1.6.1	107399,107400
2qghA	425	2.24e-37		
3c5qA	425	2.58e-37		
2o0tA	467	5.34e-37		
1hkvA	453	5.96e-37	b.49.2.3,c.1.6.1	83559,83560
2yxxA	386	7.68e-34		
2oo0A	471	2.25e-32		
2on3A	461	2.38e-32		
7odcA	424	4.13e-32	b.49.2.3,c.1.6.1	26488,28650
1d7kA	421	4.72e-32	b.49.2.3,c.1.6.1	26486,28648
1knwA	425	9.33e-32	b.49.2.3,c.1.6.1	90969,90970
2j66A	428	2.38e-31		
1njjA	425	3.46e-31	b.49.2.3,c.1.6.1	91905,91906
1f3tA	425	3.49e-31	b.49.2.3,c.1.6.1	26493,28655
1szrA	425	6.42e-31	b.49.2.3,c.1.6.1	112174,112175
2todA	425	1.21e-30	b.49.2.3,c.1.6.1	26489,28651
2pljA	419	8.32e-29		
3btnA	448	1.06e-25		
2nvaA	372	3.92e-25		
2nv9A	372	4.72e-25		
3llxA	376	0.04064		
2dy3A	361	2.542		
2odoA	357	4.926		
3gwqA	426	9.779		
3pcgA	200	17.12	b.3.6.1	22647
1w8gA	234	18.09		
1rcqA	357	19.50	b.49.2.2,c.1.6.1	104882,104883
1xfcA	384	28.18		
1tcvA	287	35.08		
3epwA	338	42.67		
3b9gA	328	43.04		
2bdvA	231	45.24	d.303.1.1	128345
1r4fA	339	45.30	c.70.1.1	96994
1hozA	339	45.45	c.70.1.1	65898
1xneA	113	48.93	b.122.1.6	115579
1kicA	339	49.63	c.70.1.1	72510
1w3hA	359	53.15	c.1.8.3	114140
3ha1A	397	53.21		
1w32A	348	56.64	c.1.8.3	114120
2vd8A	391	57.26		
1xysA	347	57.94	c.1.8.3	28903
3c7fA	487	58.24		
1e5nA	348	58.29	c.1.8.3	28904
3c7gA	488	58.61		
1w2vA	348	58.79	c.1.8.3	114104
2ktqA	538	63.58	c.55.3.5,e.8.1.1	33702,42995
1qtmA	539	63.60	c.55.3.5,e.8.1.1	33695,42988
4ktqA	539	63.60	c.55.3.5,e.8.1.1	33706,42999
3ktqA	540	63.63	c.55.3.5,e.8.1.1	33696,42989
1ktqA	543	63.68	c.55.3.5,e.8.1.1	33703,42996
1qssA	539	63.80	c.55.3.5,e.8.1.1	33697,42990
1clxA	347	65.43	c.1.8.3	28899
1w2pA	348	65.68	c.1.8.3	114102
1dmsA	781	70.21	b.52.2.2,c.81.1.1	26906,35314
2oblA	347	74.36		
1ugnA	198	74.43	b.1.1.4,b.1.1.4	107828,107829
1wn2A	121	74.44		
3d2uD	198	76.56	b.1.1.4,b.1.1.4	157256,157257
1vfsA	386	84.49	b.49.2.2,c.1.6.1	108584,108585
1g0xA	197	84.77	b.1.1.4,b.1.1.4	21805,21806
1p8oA	314	85.47	c.42.1.1	87968
1ukwA	379	86.49	a.29.3.1,e.6.1.1	113263,113264