# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o0tA 467 1.08e-40 1twiA 434 1.23e-40 b.49.2.3,c.1.6.1 107399,107400 2qghA 425 1.25e-40 1tufA 434 2.84e-40 b.49.2.3,c.1.6.1 107335,107336 2p3eA 420 3.76e-37 2j66A 428 2.88e-36 1knwA 425 3.96e-36 b.49.2.3,c.1.6.1 90969,90970 2yxxA 386 8.18e-35 7odcA 424 8.47e-35 b.49.2.3,c.1.6.1 26488,28650 2pljA 419 9.12e-34 2nvaA 372 1.63e-32 1xfcA 384 1.02e-23 3gwqA 426 1.66e-22 2dy3A 361 1.88e-22 1rcqA 357 4.05e-22 b.49.2.2,c.1.6.1 104882,104883 2vd8A 391 8.43e-21 1bd0A 388 1.92e-20 b.49.2.2,c.1.6.1 26480,28642 1vfsA 386 2.61e-20 b.49.2.2,c.1.6.1 108584,108585 3co8A 380 2.39e-19 3llxA 376 4.01e-16 3kw3A 376 5.31e-12 3hurA 395 1.49e-09 3e6eA 371 3.23e-07 1w8gA 234 0.000877 3cpgA 282 0.05702 3lhlA 287 0.1633 1ct5A 256 2.205 c.1.6.2 28663 2wnwA 447 4.239 1vc4A 254 8.531 c.1.2.4 100557 1xfkA 336 8.615 c.42.1.1 115264 2ef5A 290 10.02 1l2uA 245 10.97 c.1.2.3 73516 2hk0A 309 10.97 1d3vA 323 11.55 c.42.1.1 32559 2yr1A 257 11.76 1k77A 260 12.25 c.1.15.5 72096 1kyzA 365 13.90 a.4.5.29,c.66.1.12 73312,73313 1qtwA 285 14.27 c.1.15.1 29392 1ojxA 263 14.58 c.1.10.1 93164 3m1rA 322 17.56 1f6yA 262 17.60 c.1.21.2 29673 2a0mA 316 17.65 c.42.1.1 125960 3cqjA 295 17.74 1e39A 571 18.24 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 2nlyA 245 18.52 c.6.2.7 138364 2vc7A 314 18.71 3ewiA 168 20.25 1o08A 221 21.09 c.108.1.6 86525 2kksA 146 21.52 1wohA 305 21.57 c.42.1.1 109446 3canA 182 22.61 3ipwA 325 25.48 1sfjA 238 27.44 c.1.10.1 112075 2ghrA 302 27.44 c.23.16.8 135208 1qo8A 566 27.74 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1rlkA 117 28.88 c.131.1.1 97651 3guvA 167 29.20 2g0wA 296 31.27 c.1.15.4 134503 2aebA 322 32.98 c.42.1.1 126617 1oapA 109 33.17 d.79.7.1 92706 1i60A 278 34.34 c.1.15.4 71118 2f4nA 273 34.35 3iivA 263 35.11 3ju2A 284 35.24 1eqcA 394 35.97 c.1.8.3 28811 3mmzA 176 36.16 1bqcA 302 37.91 c.1.8.3 28831 3m7wA 255 42.92 1q7sA 117 44.21 c.131.1.1 96055 1m5wA 243 44.25 c.1.24.1 84836 1ve5A 311 44.27 c.79.1.1 120013 1xp3A 307 44.92 c.1.15.1 122210 3bdwB 120 45.09 3ktcA 333 47.07 3dx5A 286 48.07 3e49A 311 48.41 2q02A 272 48.45 c.1.15.4 149978 2qkfA 280 48.65 3iioA 262 48.94 2zdsA 340 49.60 2ftpA 302 51.75 3ks6A 250 53.05 3e8mA 164 54.26 2reb 352 56.16 2rauA 354 56.17 3ebvA 302 57.01 2vsnA 568 57.41 1zbfA 142 57.53 c.55.3.1 124850 1r5jA 337 57.86 c.77.1.5 97097 1zsyA 357 61.86 2f46A 156 63.38 2zvrA 290 63.71 3cnyA 301 64.16 1ejxC 567 65.68 b.92.1.1,c.1.9.2 83184,83185 1xi3A 215 66.03 c.1.3.1 109601 1vmiA 355 67.48 c.77.1.5 113678 2pr7A 137 68.38 1qfeA 252 72.22 c.1.10.1 29167 1gq6A 313 72.67 c.42.1.1 70341 1ho1A 242 73.43 c.1.24.1 61097 2h4pA 394 73.51 1w8sA 263 75.17 c.1.10.1 120744 2pc8A 400 77.11 3iv3A 332 78.48 3e2vA 401 79.77 2h9aA 445 83.56 2wklA 497 84.52 3m2tA 359 85.97 2v3fA 505 86.43 b.71.1.2,c.1.8.3 152453,152454 1gqnA 252 88.26 c.1.10.1 90514 2fliA 220 89.31 c.1.2.2 133714