# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 4.20e-43 b.49.2.3,c.1.6.1 107399,107400 2o0tA 467 1.05e-42 2qghA 425 1.22e-42 1tufA 434 1.26e-42 b.49.2.3,c.1.6.1 107335,107336 2p3eA 420 2.13e-39 2j66A 428 2.61e-38 1knwA 425 3.02e-38 b.49.2.3,c.1.6.1 90969,90970 2yxxA 386 6.62e-37 7odcA 424 1.02e-36 b.49.2.3,c.1.6.1 26488,28650 2pljA 419 1.25e-35 2nvaA 372 2.44e-34 1xfcA 384 1.02e-24 3gwqA 426 6.53e-24 1rcqA 357 2.00e-23 b.49.2.2,c.1.6.1 104882,104883 2dy3A 361 2.68e-23 2vd8A 391 2.91e-22 1bd0A 388 1.41e-21 b.49.2.2,c.1.6.1 26480,28642 1vfsA 386 6.54e-21 b.49.2.2,c.1.6.1 108584,108585 3co8A 380 2.75e-20 3llxA 376 7.40e-17 3kw3A 376 1.61e-12 3hurA 395 3.63e-10 3e6eA 371 2.66e-07 1w8gA 234 0.000318 3lhlA 287 0.04047 3cpgA 282 0.04974 2wnwA 447 0.8673 1ct5A 256 1.020 c.1.6.2 28663 2ef5A 290 3.499 1xfkA 336 4.413 c.42.1.1 115264 1d3vA 323 4.552 c.42.1.1 32559 3m1rA 322 6.222 2a0mA 316 9.114 c.42.1.1 125960 2yr1A 257 10.33 2aebA 322 11.00 c.42.1.1 126617 2vsnA 568 13.89 1ojxA 263 15.65 c.1.10.1 93164 1vc4A 254 16.85 c.1.2.4 100557 3canA 182 17.64 1kyzA 365 19.25 a.4.5.29,c.66.1.12 73312,73313 2kksA 146 20.59 1sfjA 238 21.97 c.1.10.1 112075 1oapA 109 22.79 d.79.7.1 92706 1wohA 305 23.26 c.42.1.1 109446 1f6yA 262 23.53 c.1.21.2 29673 1o08A 221 23.65 c.108.1.6 86525 1gq6A 313 24.73 c.42.1.1 70341 2ghrA 302 25.22 c.23.16.8 135208 3ks6A 250 25.53 1k77A 260 25.87 c.1.15.5 72096 2wklA 497 26.76 1eqcA 394 27.46 c.1.8.3 28811 2qkfA 280 28.52 2ftpA 302 29.88 1rlkA 117 30.15 c.131.1.1 97651 2qv5A 261 30.87 2hk0A 309 30.98 2f4nA 273 31.34 1e39A 571 34.06 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 2v3fA 505 34.60 b.71.1.2,c.1.8.3 152453,152454 1m5wA 243 34.74 c.1.24.1 84836 3ipwA 325 35.51 1qo8A 566 36.12 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1xp3A 307 36.39 c.1.15.1 122210 2pr7A 137 37.00 3cqjA 295 37.47 2vc7A 314 38.01 1l2uA 245 39.96 c.1.2.3 73516 3ebvA 302 40.43 1r5jA 337 42.56 c.77.1.5 97097 1bqcA 302 43.07 c.1.8.3 28831 2nlyA 245 44.21 c.6.2.7 138364 1q7sA 117 45.07 c.131.1.1 96055 2rauA 354 45.62 1lt8A 406 45.80 c.1.26.1 78186 3guvA 167 46.13 1wkvA 389 47.24 c.79.1.1 120989 2hdwA 367 49.02 3m7wA 255 49.65 1h4pA 408 51.68 c.1.8.3 90617 3e49A 311 51.89 2qwvA 208 52.92 c.116.1.7 151439 1qtwA 285 53.46 c.1.15.1 29392 2q02A 272 53.95 c.1.15.4 149978 3ktcA 333 54.76 3kwsA 287 55.16 1ve5A 311 55.20 c.79.1.1 120013 3iivA 263 55.89 2gmwA 211 59.79 c.108.1.19 147137 3bdwB 120 61.77 1xi3A 215 63.27 c.1.3.1 109601 3mmzA 176 65.47 2pc8A 400 66.28 3ju2A 284 66.73 3ewiA 168 67.94 3cnyA 301 68.68 1i4nA 251 73.36 c.1.2.4 71114 2fliA 220 73.36 c.1.2.2 133714 3iioA 262 74.16 3e02A 311 74.92 1ho1A 242 75.75 c.1.24.1 61097 2h4pA 394 82.34 1u69A 163 84.69 d.32.1.7 107699 3iv3A 332 84.91 3dx5A 286 85.13 1oltA 457 85.63 c.1.28.2 93334 2reb 352 86.78 2e7fA 262 87.20 1d2mA 665 88.39 c.37.1.19,c.37.1.19 32417,32418 3bh0A 315 88.62