# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2o0tA	467	2.31e-43		
2qghA	425	3.19e-43		
1twiA	434	3.92e-43	b.49.2.3,c.1.6.1	107399,107400
1tufA	434	7.84e-43	b.49.2.3,c.1.6.1	107335,107336
2p3eA	420	1.17e-39		
2j66A	428	1.58e-38		
1knwA	425	2.04e-38	b.49.2.3,c.1.6.1	90969,90970
2yxxA	386	8.29e-37		
7odcA	424	9.40e-37	b.49.2.3,c.1.6.1	26488,28650
2pljA	419	6.57e-36		
2nvaA	372	2.45e-34		
1xfcA	384	2.97e-25		
3gwqA	426	1.59e-24		
1rcqA	357	1.08e-23	b.49.2.2,c.1.6.1	104882,104883
2dy3A	361	1.44e-23		
1bd0A	388	9.71e-22	b.49.2.2,c.1.6.1	26480,28642
2vd8A	391	2.52e-21		
1vfsA	386	7.34e-21	b.49.2.2,c.1.6.1	108584,108585
3co8A	380	2.77e-20		
3llxA	376	2.43e-16		
3kw3A	376	4.54e-12		
3hurA	395	1.86e-09		
3e6eA	371	1.51e-06		
1w8gA	234	0.002072		
3cpgA	282	0.01001		
3lhlA	287	0.08896		
2wnwA	447	5.578		
3m1rA	322	5.593		
1ct5A	256	6.063	c.1.6.2	28663
1kyzA	365	7.731	a.4.5.29,c.66.1.12	73312,73313
1xfkA	336	8.333	c.42.1.1	115264
1qtwA	285	8.354	c.1.15.1	29392
2ef5A	290	12.47		
1l2uA	245	14.11	c.1.2.3	73516
2kksA	146	19.33		
3cqjA	295	20.87		
2hk0A	309	21.31		
3bdwB	120	23.93		
1rlkA	117	24.68	c.131.1.1	97651
1ho1A	242	24.88	c.1.24.1	61097
1qo8A	566	28.28	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
1q7sA	117	30.39	c.131.1.1	96055
3gnlA	244	30.54		
2nlyA	245	30.70	c.6.2.7	138364
1k77A	260	30.74	c.1.15.5	72096
1ojxA	263	31.24	c.1.10.1	93164
2a0mA	316	31.31	c.42.1.1	125960
2aebA	322	31.96	c.42.1.1	126617
1d3vA	323	33.55	c.42.1.1	32559
3dx5A	286	33.64		
2jepA	395	38.70		
2f4nA	273	38.88		
3ju2A	284	39.38		
1o08A	221	39.50	c.108.1.6	86525
2qw5A	335	40.11		
1f6yA	262	40.76	c.1.21.2	29673
2g0wA	296	41.12	c.1.15.4	134503
1m5wA	243	42.17	c.1.24.1	84836
2vuvA	129	43.75		
1oapA	109	46.03	d.79.7.1	92706
3e2vA	401	48.41		
1e39A	571	48.81	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
3cnyA	301	51.05		
1qfeA	252	51.17	c.1.10.1	29167
1ujqA	305	51.87	c.1.12.7	99463
1ve5A	311	53.07	c.79.1.1	120013
1eqcA	394	53.11	c.1.8.3	28811
1gqnA	252	55.74	c.1.10.1	90514
2e7fA	262	58.13		
3ipwA	325	58.15		
3guvA	167	63.69		
2h4pA	394	67.18		
3iivA	263	67.29		
2pc8A	400	70.13		
2pr7A	137	70.32		
2v3fA	505	72.83	b.71.1.2,c.1.8.3	152453,152454
1bu8A	452	73.88	b.12.1.2,c.69.1.19	23647,34795
2vc7A	314	74.44		
1i60A	278	75.00	c.1.15.4	71118
1vc4A	254	75.45	c.1.2.4	100557
2gqrA	237	77.30		
2vsnA	568	79.37		
2hhjA	267	81.29	c.60.1.1	136497
2hy1A	280	82.62	d.159.1.11	147437
3canA	182	83.59		
1v2dA	381	84.02	c.67.1.1	108281
2ogyA	262	85.50		
2rauA	354	88.80		
2ftpA	302	89.04