# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2o0tA	467	2.89e-40		
2qghA	425	3.17e-40		
1twiA	434	7.26e-40	b.49.2.3,c.1.6.1	107399,107400
1tufA	434	1.33e-39	b.49.2.3,c.1.6.1	107335,107336
2p3eA	420	7.37e-37		
2j66A	428	6.63e-36		
1knwA	425	7.36e-36	b.49.2.3,c.1.6.1	90969,90970
7odcA	424	2.20e-34	b.49.2.3,c.1.6.1	26488,28650
2yxxA	386	3.88e-34		
2pljA	419	1.71e-33		
2nvaA	372	4.67e-32		
1xfcA	384	1.10e-23		
3gwqA	426	5.66e-23		
2dy3A	361	3.01e-22		
1rcqA	357	3.70e-22	b.49.2.2,c.1.6.1	104882,104883
1bd0A	388	4.31e-20	b.49.2.2,c.1.6.1	26480,28642
2vd8A	391	6.76e-20		
1vfsA	386	1.67e-19	b.49.2.2,c.1.6.1	108584,108585
3co8A	380	8.45e-19		
3llxA	376	1.93e-15		
3kw3A	376	2.35e-11		
3hurA	395	6.64e-09		
3e6eA	371	3.47e-06		
1w8gA	234	0.003626		
3cpgA	282	0.01623		
3lhlA	287	0.1029		
1xfkA	336	5.319	c.42.1.1	115264
1ct5A	256	5.545	c.1.6.2	28663
3m1rA	322	6.333		
1qtwA	285	8.545	c.1.15.1	29392
2ef5A	290	9.754		
2wnwA	447	11.02		
1l2uA	245	11.65	c.1.2.3	73516
1ojxA	263	17.19	c.1.10.1	93164
1k77A	260	17.95	c.1.15.5	72096
1qo8A	566	18.54	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
2kksA	146	19.47		
1kyzA	365	20.21	a.4.5.29,c.66.1.12	73312,73313
3cqjA	295	20.60		
2nlyA	245	21.03	c.6.2.7	138364
1d3vA	323	22.21	c.42.1.1	32559
3ipwA	325	23.65		
1rlkA	117	24.34	c.131.1.1	97651
2aebA	322	25.34	c.42.1.1	126617
1o08A	221	25.84	c.108.1.6	86525
1eqcA	394	27.82	c.1.8.3	28811
1f6yA	262	28.39	c.1.21.2	29673
1q7sA	117	30.95	c.131.1.1	96055
3bdwB	120	31.34		
2a0mA	316	31.61	c.42.1.1	125960
1vc4A	254	32.04	c.1.2.4	100557
2pc8A	400	32.92		
1ve5A	311	33.95	c.79.1.1	120013
1ho1A	242	34.22	c.1.24.1	61097
1e39A	571	34.52	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
2hk0A	309	35.22		
2ftpA	302	36.39		
1m5wA	243	38.99	c.1.24.1	84836
3dx5A	286	39.21		
1oapA	109	39.96	d.79.7.1	92706
3ju2A	284	43.34		
1ujqA	305	45.79	c.1.12.7	99463
2qw5A	335	46.70		
3e2vA	401	47.53		
2i3dA	249	48.32	c.69.1.36	147499
2e7fA	262	50.35		
3cnyA	301	50.86		
1i60A	278	51.86	c.1.15.4	71118
2qkfA	280	52.98		
2vsnA	568	54.85		
2reb	352	58.00		
3iivA	263	58.16		
2g0wA	296	58.58	c.1.15.4	134503
1rd5A	262	58.86	c.1.2.4	111772
2jepA	395	59.25		
1owlA	484	61.34	a.99.1.1,c.28.1.1	93647,93648
2vc7A	314	61.49		
1gq6A	313	62.30	c.42.1.1	70341
3iioA	262	62.37		
3mmzA	176	62.76		
2h4pA	394	63.16		
2f4nA	273	64.14		
2ogyA	262	64.69		
2vuvA	129	65.23		
2pr7A	137	68.62		
3guvA	167	69.27		
3canA	182	70.47		
1qfeA	252	70.80	c.1.10.1	29167
1zbfA	142	72.91	c.55.3.1	124850
1wohA	305	75.11	c.42.1.1	109446
1z82A	335	75.61		
1gqnA	252	75.80	c.1.10.1	90514
2qv5A	261	75.94		
3ewiA	168	77.55		
1bqcA	302	79.82	c.1.8.3	28831
3ktcA	333	83.93		
1ejxC	567	85.67	b.92.1.1,c.1.9.2	83184,83185
2gqrA	237	85.81		
2v3fA	505	86.75	b.71.1.2,c.1.8.3	152453,152454
1u69A	163	88.77	d.32.1.7	107699