# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2o0tA	467	1.05e-41		
2qghA	425	1.25e-41		
1twiA	434	3.37e-41	b.49.2.3,c.1.6.1	107399,107400
1tufA	434	5.41e-41	b.49.2.3,c.1.6.1	107335,107336
2p3eA	420	5.34e-38		
2j66A	428	4.02e-37		
1knwA	425	6.44e-37	b.49.2.3,c.1.6.1	90969,90970
7odcA	424	1.46e-35	b.49.2.3,c.1.6.1	26488,28650
2yxxA	386	3.57e-35		
2pljA	419	1.54e-34		
2nvaA	372	4.84e-33		
1xfcA	384	2.41e-24		
3gwqA	426	8.63e-24		
1rcqA	357	6.34e-23	b.49.2.2,c.1.6.1	104882,104883
2dy3A	361	7.46e-23		
1bd0A	388	4.58e-21	b.49.2.2,c.1.6.1	26480,28642
2vd8A	391	1.37e-20		
1vfsA	386	2.69e-20	b.49.2.2,c.1.6.1	108584,108585
3co8A	380	1.45e-19		
3llxA	376	4.54e-16		
3kw3A	376	9.10e-12		
3hurA	395	3.76e-09		
3e6eA	371	2.50e-06		
1w8gA	234	0.003187		
3cpgA	282	0.01100		
3lhlA	287	0.1130		
1ct5A	256	3.591	c.1.6.2	28663
1xfkA	336	7.004	c.42.1.1	115264
3m1rA	322	7.243		
1qtwA	285	8.716	c.1.15.1	29392
2wnwA	447	9.856		
2ef5A	290	10.86		
1l2uA	245	16.96	c.1.2.3	73516
1f6yA	262	18.17	c.1.21.2	29673
3cqjA	295	19.46		
1d3vA	323	19.58	c.42.1.1	32559
1ho1A	242	21.38	c.1.24.1	61097
2aebA	322	22.60	c.42.1.1	126617
1m5wA	243	22.84	c.1.24.1	84836
1ojxA	263	23.89	c.1.10.1	93164
3ipwA	325	25.13		
1kyzA	365	26.07	a.4.5.29,c.66.1.12	73312,73313
2nlyA	245	26.67	c.6.2.7	138364
2kksA	146	27.14		
1k77A	260	27.91	c.1.15.5	72096
2a0mA	316	27.97	c.42.1.1	125960
1qo8A	566	28.97	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
3dx5A	286	28.99		
1ve5A	311	30.66	c.79.1.1	120013
1o08A	221	30.80	c.108.1.6	86525
1rlkA	117	31.98	c.131.1.1	97651
1oapA	109	32.64	d.79.7.1	92706
3ju2A	284	35.17		
2i3dA	249	36.39	c.69.1.36	147499
1q7sA	117	37.42	c.131.1.1	96055
2qkfA	280	37.79		
3e2vA	401	38.01		
1e39A	571	39.11	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
2h4pA	394	40.67		
1ujqA	305	40.80	c.1.12.7	99463
2f4nA	273	41.49		
2e7fA	262	41.51		
1gqnA	252	43.87	c.1.10.1	90514
1qfeA	252	44.09	c.1.10.1	29167
1eqcA	394	44.20	c.1.8.3	28811
3bdwB	120	44.24		
2vsnA	568	45.64		
2jepA	395	48.65		
1wohA	305	49.51	c.42.1.1	109446
2v3fA	505	50.62	b.71.1.2,c.1.8.3	152453,152454
2ftpA	302	54.03		
3guvA	167	57.40		
2ghrA	302	57.46	c.23.16.8	135208
2pc8A	400	57.77		
2ogyA	262	58.51		
1i60A	278	60.27	c.1.15.4	71118
1vc4A	254	60.60	c.1.2.4	100557
3cnyA	301	65.18		
3iivA	263	65.33		
1gq6A	313	65.70	c.42.1.1	70341
2hk0A	309	66.06		
2g0wA	296	67.80	c.1.15.4	134503
3m7wA	255	68.85		
1ile	821	69.69		
1rd5A	262	70.14	c.1.2.4	111772
3iioA	262	71.24		
2qv5A	261	73.68		
3canA	182	75.58		
1bqcA	302	77.77	c.1.8.3	28831
1y0pA	571	79.44	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
1u69A	163	81.48	d.32.1.7	107699
3ktcA	333	84.95		
1sfjA	238	86.02	c.1.10.1	112075
2yr1A	257	86.57		
3iv3A	332	88.84		
1owlA	484	89.11	a.99.1.1,c.28.1.1	93647,93648
1gpl	432	89.46