# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2o0tA	467	2.24e-39		
1twiA	434	2.69e-39	b.49.2.3,c.1.6.1	107399,107400
1tufA	434	4.37e-39	b.49.2.3,c.1.6.1	107335,107336
2qghA	425	2.12e-38		
2p3eA	420	4.78e-36		
1knwA	425	6.54e-35	b.49.2.3,c.1.6.1	90969,90970
2j66A	428	1.09e-34		
2yxxA	386	1.04e-33		
7odcA	424	1.33e-33	b.49.2.3,c.1.6.1	26488,28650
2pljA	419	5.17e-33		
2nvaA	372	2.46e-31		
1xfcA	384	5.47e-23		
3gwqA	426	8.64e-22		
1rcqA	357	1.36e-21	b.49.2.2,c.1.6.1	104882,104883
2dy3A	361	1.80e-21		
1vfsA	386	6.15e-20	b.49.2.2,c.1.6.1	108584,108585
1bd0A	388	1.01e-19	b.49.2.2,c.1.6.1	26480,28642
2vd8A	391	1.39e-19		
3co8A	380	1.28e-18		
3llxA	376	7.99e-15		
3kw3A	376	4.00e-11		
3hurA	395	8.02e-09		
3e6eA	371	3.38e-06		
1w8gA	234	0.002645		
3cpgA	282	0.03394		
3lhlA	287	0.5097		
1ct5A	256	2.793	c.1.6.2	28663
2wnwA	447	3.513		
1qfeA	252	8.370	c.1.10.1	29167
1xfkA	336	8.900	c.42.1.1	115264
1gqnA	252	9.471	c.1.10.1	90514
1d3vA	323	12.12	c.42.1.1	32559
2ef5A	290	12.75		
1e39A	571	14.03	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
2a0mA	316	16.20	c.42.1.1	125960
1k77A	260	17.12	c.1.15.5	72096
2kksA	146	18.15		
2yr1A	257	18.94		
3m1rA	322	19.60		
1l2uA	245	19.69	c.1.2.3	73516
2hk0A	309	20.51		
3bdwB	120	21.43		
1vc4A	254	22.27	c.1.2.4	100557
2vc7A	314	22.63		
2vsnA	568	22.84		
3guvA	167	25.05		
2h4pA	394	25.11		
1qtwA	285	26.74	c.1.15.1	29392
3canA	182	26.88		
1ojxA	263	27.57	c.1.10.1	93164
1f6yA	262	28.09	c.1.21.2	29673
1rlkA	117	28.14	c.131.1.1	97651
1o08A	221	28.75	c.108.1.6	86525
1oapA	109	29.59	d.79.7.1	92706
3m7wA	255	30.10		
1qo8A	566	32.21	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
1ujqA	305	34.77	c.1.12.7	99463
3ladA	476	35.05	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1q7sA	117	37.24	c.131.1.1	96055
1ejxC	567	39.51	b.92.1.1,c.1.9.2	83184,83185
1xp3A	307	39.91	c.1.15.1	122210
2pc8A	400	41.52		
2e7fA	262	42.65		
1kyzA	365	42.95	a.4.5.29,c.66.1.12	73312,73313
1sfjA	238	47.29	c.1.10.1	112075
3lb0A	276	48.60		
1rd5A	262	50.93	c.1.2.4	111772
2qwvA	208	51.29	c.116.1.7	151439
2vuvA	129	54.17		
3cqjA	295	57.12		
3ipwA	325	59.98		
3e49A	311	60.75		
3ks6A	250	61.53		
1hcl	298	63.57		
1owlA	484	65.17	a.99.1.1,c.28.1.1	93647,93648
2tysA	268	65.31	c.1.2.4	28572
2ogyA	262	67.45		
1hskA	326	67.46	d.145.1.2,d.146.1.1	61241,61242
1sflA	238	69.13	c.1.10.1	112077
2pr7A	137	72.40		
3cnyA	301	73.07		
1m5wA	243	73.29	c.1.24.1	84836
1bqcA	302	78.38	c.1.8.3	28831
1eqcA	394	80.30	c.1.8.3	28811
1w8sA	263	81.57	c.1.10.1	120744
2wklA	497	82.66		
3ffjA	666	84.55		
2g0wA	296	85.10	c.1.15.4	134503
3mmzA	176	85.43		
3ewiA	168	86.49		
1g57A	217	86.96	d.115.1.2	60253
1gq6A	313	87.67	c.42.1.1	70341
2z1eA	342	88.85	d.79.4.1,d.139.1.1	153932,153933
2v9yA	334	89.20		
1gz8A	299	89.21	d.144.1.7	83405
2aebA	322	89.60	c.42.1.1	126617