# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 5.39e-34 b.49.2.3,c.1.6.1 107399,107400 2o0tA 467 1.89e-33 1tufA 434 3.53e-33 b.49.2.3,c.1.6.1 107335,107336 2qghA 425 4.67e-33 2p3eA 420 1.56e-30 1knwA 425 7.32e-30 b.49.2.3,c.1.6.1 90969,90970 2j66A 428 2.55e-29 7odcA 424 6.14e-29 b.49.2.3,c.1.6.1 26488,28650 2yxxA 386 1.13e-28 2pljA 419 6.06e-28 2nvaA 372 5.40e-27 1xfcA 384 1.11e-19 3gwqA 426 4.56e-19 1rcqA 357 7.34e-19 b.49.2.2,c.1.6.1 104882,104883 2dy3A 361 1.23e-18 1bd0A 388 1.40e-17 b.49.2.2,c.1.6.1 26480,28642 1vfsA 386 8.80e-17 b.49.2.2,c.1.6.1 108584,108585 2vd8A 391 1.80e-16 3co8A 380 8.76e-16 3llxA 376 2.73e-13 3kw3A 376 6.07e-10 3hurA 395 1.81e-07 3e6eA 371 6.98e-05 1w8gA 234 0.01107 3cpgA 282 0.04083 3lhlA 287 0.9317 2bs3A 656 1.390 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 3m1rA 322 1.991 2wklA 497 2.100 3a5vA 397 3.019 1ejxC 567 3.222 b.92.1.1,c.1.9.2 83184,83185 1xfkA 336 4.008 c.42.1.1 115264 1l2uA 245 5.150 c.1.2.3 73516 2hk0A 309 5.253 1kyzA 365 5.998 a.4.5.29,c.66.1.12 73312,73313 1vdzA 588 6.354 2ef5A 290 6.706 1ojxA 263 6.800 c.1.10.1 93164 1ct5A 256 7.332 c.1.6.2 28663 1qtwA 285 8.532 c.1.15.1 29392 1eqcA 394 8.551 c.1.8.3 28811 1ylhA 560 8.604 2v3fA 505 9.288 b.71.1.2,c.1.8.3 152453,152454 3a9bA 395 9.453 2hhjA 267 10.07 c.60.1.1 136497 1u1jA 765 10.57 c.1.22.2,c.1.22.2 107590,107591 2kksA 146 11.14 1m5wA 243 11.28 c.1.24.1 84836 1qo8A 566 11.80 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1k77A 260 12.42 c.1.15.5 72096 8abp 306 13.20 2h9aA 445 13.34 1qs0A 407 13.75 c.36.1.11 31829 1gqnA 252 14.13 c.1.10.1 90514 2a0mA 316 14.54 c.42.1.1 125960 2h88A 621 14.58 1f6yA 262 14.85 c.1.21.2 29673 3gxpA 398 14.86 2g0wA 296 15.24 c.1.15.4 134503 1ceo 343 15.43 1qfeA 252 15.83 c.1.10.1 29167 1wkyA 464 17.82 b.18.1.31,c.1.8.3 120992,120993 2vsnA 568 18.25 1p49A 562 19.99 c.76.1.2 94089 2wnwA 447 20.08 2qw5A 335 20.09 3cqjA 295 20.66 3dx5A 286 21.21 1p1xA 260 22.17 c.1.10.1 104060 1ja1A 622 22.64 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 3ipwA 325 22.82 1i60A 278 23.31 c.1.15.4 71118 2qkfA 280 23.61 2f4nA 273 23.74 1bu8A 452 23.78 b.12.1.2,c.69.1.19 23647,34795 3ffjA 666 23.78 3gbeA 558 24.93 3focA 451 25.41 2ag6A 314 25.57 3jzmA 519 25.85 1fobA 334 26.48 c.1.8.3 83255 1vc4A 254 26.73 c.1.2.4 100557 1x6vA 630 27.79 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3canA 182 27.90 1o08A 221 28.55 c.108.1.6 86525 1ur4A 399 29.37 c.1.8.3 113402 2pc8A 400 29.62 3a64A 395 30.83 2rduA 387 31.32 1z45A 699 31.60 b.30.5.4,c.2.1.2 124427,124428 1d3vA 323 31.84 c.42.1.1 32559 2i3dA 249 32.13 c.69.1.36 147499 1ni4A 365 33.06 c.36.1.11 85728 1wb9A 800 33.81 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 120833,120834,120835,120836 1y0pA 571 33.92 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1ru8A 232 34.30 c.26.2.1 97849 2icsA 379 34.42 b.92.1.8,c.1.9.14 137241,137242 2yr1A 257 34.89 1w8sA 263 35.18 c.1.10.1 120744 2ogyA 262 38.56 2vc7A 314 38.75 3m7wA 255 38.99 1ve5A 311 39.00 c.79.1.1 120013 1wy5A 317 39.97 c.26.2.5,d.229.1.1 121428,121429 2jdiD 482 40.04 a.69.1.1,b.49.1.1,c.37.1.11 138263,138264,138265 1ujqA 305 40.63 c.1.12.7 99463 1cs0A 1073 41.57 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2napA 723 43.28 b.52.2.2,c.81.1.1 26926,35334 3hg3A 404 43.89 3guvA 167 44.01 3ju2A 284 44.69 1ho1A 242 45.75 c.1.24.1 61097 1pg4A 652 46.15 e.23.1.1 88067 3i28A 555 48.02 2q02A 272 48.69 c.1.15.4 149978 1xovA 326 49.19 b.34.11.4,c.56.5.6 122206,122207 3c86A 328 49.97 2h4pA 394 50.16 1bqcA 302 51.05 c.1.8.3 28831 1sfjA 238 51.34 c.1.10.1 112075 1c7sA 858 51.66 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2qwvA 208 52.49 c.116.1.7 151439 1xp3A 307 52.71 c.1.15.1 122210 2e7fA 262 53.00 1rd5A 262 53.27 c.1.2.4 111772 1gpl 432 55.20 2c0hA 353 55.62 c.1.8.3 129594 2rjoA 332 57.26 2wzbA 416 57.59 1jndA 420 58.05 c.1.8.5,d.26.3.1 71757,71758 1z15A 344 59.01 3hjhA 483 59.15 1pixA 587 59.68 c.14.1.4,c.14.1.4 118578,118579 1ozhA 566 60.90 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 3ewiA 168 62.62 1usgA 346 64.62 c.93.1.1 99864 1h4pA 408 66.84 c.1.8.3 90617 1glcG 501 67.48 c.55.1.4,c.55.1.4 33519,33520 3lb0A 276 67.76 2b43A 526 68.02 1oapA 109 68.46 d.79.7.1 92706 1x31B 404 69.70 2f2hA 773 71.04 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 132818,132819,132820,132821 2j5vA 367 73.36 3griA 424 75.12 3gdpA 521 75.75 2tysA 268 78.45 c.1.2.4 28572 1xwyA 264 79.04 c.1.9.12 122411 2zvrA 290 79.66 1kssA 571 82.45 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1jx6A 342 82.66 c.93.1.1 67406 2pmbA 462 83.53 2gqrA 237 83.57 2vhxA 377 83.65 1rlkA 117 84.14 c.131.1.1 97651 2rebA 352 84.74 c.37.1.11,d.48.1.1 32282,38767 3bdwB 120 85.41 2vx5A 396 86.04 2dztA 248 87.48 1e39A 571 87.53 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1geqA 248 88.54 c.1.2.4 28589