# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o0tA 467 3.80e-38 1twiA 434 4.40e-38 b.49.2.3,c.1.6.1 107399,107400 1tufA 434 1.02e-37 b.49.2.3,c.1.6.1 107335,107336 2qghA 425 1.05e-37 2p3eA 420 6.48e-35 1knwA 425 6.32e-34 b.49.2.3,c.1.6.1 90969,90970 2j66A 428 9.13e-34 2yxxA 386 7.96e-33 7odcA 424 1.57e-32 b.49.2.3,c.1.6.1 26488,28650 2pljA 419 7.99e-32 2nvaA 372 2.72e-30 1xfcA 384 3.02e-22 3gwqA 426 1.83e-21 1rcqA 357 3.68e-21 b.49.2.2,c.1.6.1 104882,104883 2dy3A 361 6.86e-21 1vfsA 386 2.34e-19 b.49.2.2,c.1.6.1 108584,108585 1bd0A 388 2.35e-19 b.49.2.2,c.1.6.1 26480,28642 2vd8A 391 4.78e-19 3co8A 380 4.12e-18 3llxA 376 7.60e-15 3kw3A 376 5.97e-11 3hurA 395 9.30e-09 3e6eA 371 4.02e-06 1w8gA 234 0.003940 3cpgA 282 0.03519 3lhlA 287 0.9251 1ct5A 256 2.379 c.1.6.2 28663 2wnwA 447 5.463 1xfkA 336 7.913 c.42.1.1 115264 2ef5A 290 13.52 1qfeA 252 14.77 c.1.10.1 29167 1gqnA 252 15.89 c.1.10.1 90514 1o08A 221 16.73 c.108.1.6 86525 2a0mA 316 17.21 c.42.1.1 125960 1f6yA 262 17.48 c.1.21.2 29673 1d3vA 323 17.59 c.42.1.1 32559 2vsnA 568 17.64 2kksA 146 18.76 2yr1A 257 20.35 1e39A 571 20.50 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1l2uA 245 21.49 c.1.2.3 73516 3canA 182 21.72 3m1rA 322 23.10 1kyzA 365 25.82 a.4.5.29,c.66.1.12 73312,73313 2vc7A 314 27.57 1rd5A 262 28.25 c.1.2.4 111772 3guvA 167 29.88 2h4pA 394 31.23 2hk0A 309 32.07 3m7wA 255 32.17 1k77A 260 32.51 c.1.15.5 72096 2pc8A 400 33.08 1eqcA 394 33.56 c.1.8.3 28811 1oapA 109 34.73 d.79.7.1 92706 1ujqA 305 35.29 c.1.12.7 99463 1ojxA 263 35.48 c.1.10.1 93164 2e7fA 262 35.94 1rlkA 117 36.78 c.131.1.1 97651 1vc4A 254 37.82 c.1.2.4 100557 1qo8A 566 38.19 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2ogyA 262 38.48 1sfjA 238 41.70 c.1.10.1 112075 3bdwB 120 41.73 1xp3A 307 42.71 c.1.15.1 122210 3ks6A 250 44.15 1gq6A 313 48.57 c.42.1.1 70341 1m5wA 243 52.08 c.1.24.1 84836 1q7sA 117 52.26 c.131.1.1 96055 2tysA 268 52.83 c.1.2.4 28572 1qtwA 285 53.87 c.1.15.1 29392 3lb0A 276 56.55 2pr7A 137 59.67 1bqcA 302 63.01 c.1.8.3 28831 3ju2A 284 65.78 1sflA 238 66.01 c.1.10.1 112077 2qwvA 208 69.15 c.116.1.7 151439 3mmzA 176 75.18 2g0wA 296 75.85 c.1.15.4 134503 3ebvA 302 78.05 3cqjA 295 79.25 1ho1A 242 79.32 c.1.24.1 61097 3e49A 311 80.24 3ipwA 325 81.36 3ffjA 666 81.85 2ghrA 302 82.26 c.23.16.8 135208 3ewiA 168 84.46 3ladA 476 84.53 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2aebA 322 84.53 c.42.1.1 126617 1hcl 298 85.82 2qkfA 280 88.13 1g57A 217 88.26 d.115.1.2 60253 1ejxC 567 89.25 b.92.1.1,c.1.9.2 83184,83185