# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1twiA	434	6.50e-41	b.49.2.3,c.1.6.1	107399,107400
2o0tA	467	1.03e-40		
1tufA	434	1.60e-40	b.49.2.3,c.1.6.1	107335,107336
2qghA	425	1.65e-40		
2p3eA	420	3.56e-37		
1knwA	425	3.22e-36	b.49.2.3,c.1.6.1	90969,90970
2j66A	428	4.46e-36		
2yxxA	386	6.06e-35		
7odcA	424	7.08e-35	b.49.2.3,c.1.6.1	26488,28650
2pljA	419	6.01e-34		
2nvaA	372	3.31e-32		
1xfcA	384	3.43e-24		
2dy3A	361	7.66e-23		
1rcqA	357	1.49e-22	b.49.2.2,c.1.6.1	104882,104883
3gwqA	426	4.86e-22		
2vd8A	391	3.51e-21		
1bd0A	388	1.64e-20	b.49.2.2,c.1.6.1	26480,28642
1vfsA	386	3.51e-20	b.49.2.2,c.1.6.1	108584,108585
3co8A	380	2.57e-19		
3llxA	376	4.20e-16		
3kw3A	376	1.12e-11		
3hurA	395	4.89e-09		
3e6eA	371	2.20e-06		
1w8gA	234	0.003776		
3cpgA	282	0.05756		
3lhlA	287	0.3643		
2wnwA	447	3.257		
1kyzA	365	4.089	a.4.5.29,c.66.1.12	73312,73313
1ct5A	256	7.134	c.1.6.2	28663
1xfkA	336	14.52	c.42.1.1	115264
2qkfA	280	17.34		
1qtwA	285	17.80	c.1.15.1	29392
1gqnA	252	19.16	c.1.10.1	90514
1l2uA	245	21.06	c.1.2.3	73516
1qfeA	252	22.58	c.1.10.1	29167
2h4pA	394	23.18		
1rlkA	117	23.36	c.131.1.1	97651
1f6yA	262	25.43	c.1.21.2	29673
1e39A	571	25.72	a.138.1.3,c.3.1.4,d.168.1.1	19694,30431,42314
3bdwB	120	26.35		
2kksA	146	27.34		
2vc7A	314	27.58		
1qo8A	566	29.91	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
3m7wA	255	31.66		
2f4nA	273	32.78		
2a0mA	316	36.27	c.42.1.1	125960
2yr1A	257	36.50		
2ef5A	290	37.59		
1o08A	221	38.87	c.108.1.6	86525
3ipwA	325	39.33		
1d3vA	323	39.82	c.42.1.1	32559
1q7sA	117	40.03	c.131.1.1	96055
1k77A	260	43.79	c.1.15.5	72096
1oapA	109	44.97	d.79.7.1	92706
1ojxA	263	46.11	c.1.10.1	93164
2hk0A	309	52.18		
1u69A	163	52.40	d.32.1.7	107699
3m1rA	322	52.74		
1eqcA	394	53.43	c.1.8.3	28811
3ewiA	168	54.87		
3mmzA	176	55.36		
1sfjA	238	58.96	c.1.10.1	112075
2rauA	354	59.72		
1gq6A	313	62.43	c.42.1.1	70341
1g57A	217	64.30	d.115.1.2	60253
3ladA	476	65.67	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1bu8A	452	67.61	b.12.1.2,c.69.1.19	23647,34795
2pc8A	400	68.37		
2c7yA	404	71.61		
2hdwA	367	73.50		
1ve5A	311	74.02	c.79.1.1	120013
2ajtA	500	74.81	b.43.2.2,c.85.1.2	126894,126895
2p8tA	200	75.48	a.4.5.72,d.74.4.2	149315,149316
3ju2A	284	77.44		
1vdzA	588	79.08		
3guvA	167	79.97		
3ij6A	312	80.53		
1bqcA	302	81.74	c.1.8.3	28831
2pr7A	137	84.44		
3iivA	263	85.03		
3ks6A	250	87.66		
1xxlA	239	88.08	c.66.1.41	116203
3e49A	311	89.62