# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qghA	425	1.93e-42		
1twiA	434	1.03e-41	b.49.2.3,c.1.6.1	107399,107400
1tufA	434	1.93e-41	b.49.2.3,c.1.6.1	107335,107336
2o0tA	467	8.79e-41		
2j66A	428	1.76e-37		
2p3eA	420	3.35e-37		
1knwA	425	1.36e-36	b.49.2.3,c.1.6.1	90969,90970
2yxxA	386	9.63e-36		
2pljA	419	2.59e-34		
7odcA	424	3.02e-34	b.49.2.3,c.1.6.1	26488,28650
2nvaA	372	4.33e-33		
1xfcA	384	9.21e-23		
2dy3A	361	2.62e-22		
3gwqA	426	8.20e-22		
1rcqA	357	1.50e-21	b.49.2.2,c.1.6.1	104882,104883
1bd0A	388	1.77e-19	b.49.2.2,c.1.6.1	26480,28642
2vd8A	391	2.16e-19		
1vfsA	386	3.40e-18	b.49.2.2,c.1.6.1	108584,108585
3co8A	380	7.61e-18		
3llxA	376	3.86e-16		
3kw3A	376	4.33e-11		
3hurA	395	4.67e-08		
3e6eA	371	1.22e-07		
1w8gA	234	0.001968		
3cpgA	282	0.01196		
3lhlA	287	0.09863		
1ct5A	256	0.4565	c.1.6.2	28663
2wnwA	447	1.980		
1dozA	309	8.150	c.92.1.1	35592
3gnlA	244	10.04		
1xfkA	336	11.11	c.42.1.1	115264
2ef5A	290	11.72		
1wy5A	317	12.30	c.26.2.5,d.229.1.1	121428,121429
2vefA	314	15.72		
1h4pA	408	17.47	c.1.8.3	90617
2ac4A	309	18.75		
2v3gA	283	21.39	c.1.8.3	152457
2jepA	395	22.10		
1vc4A	254	22.57	c.1.2.4	100557
1wohA	305	24.89	c.42.1.1	109446
3goqA	310	26.44		
3kr9A	225	32.15		
2v3fA	505	33.60	b.71.1.2,c.1.8.3	152453,152454
3a5vA	397	35.48		
1m5wA	243	35.66	c.1.24.1	84836
1xi3A	215	39.99	c.1.3.1	109601
3k96A	356	40.21		
1mlaA	309	40.21	c.19.1.1,d.58.23.1	31031,39383
2ghrA	302	41.08	c.23.16.8	135208
2vc7A	314	45.62		
2napA	723	46.96	b.52.2.2,c.81.1.1	26926,35334
1d3vA	323	47.64	c.42.1.1	32559
8abp	306	48.75		
2iv2X	715	51.33	b.52.2.2,c.81.1.1	137714,137715
1aj2A	282	52.23	c.1.21.1	29665
2ac2A	309	52.54		
1bgpA	309	54.00	a.93.1.1	18690
1a0cA	438	57.98	c.1.15.3	29529
3ks6A	250	58.04		
1edg	380	60.45		
1vdzA	588	60.54		
1jx6A	342	64.40	c.93.1.1	67406
3gg7A	254	69.54		
1gq6A	313	69.77	c.42.1.1	70341
1va4A	279	70.05	c.69.1.12	108458
2i2xB	258	71.44		
1uhvA	500	71.64	b.71.1.2,c.1.8.3	99402,99403
1odzA	386	71.80	c.1.8.3	86889
2kksA	146	73.06		
2hy1A	280	73.81	d.159.1.11	147437
1hcl	298	74.25		
1fkx	349	74.75		
3f7tA	328	77.27		
1zkdA	387	77.68	c.66.1.52	125184
1dmlA	319	84.60	d.131.1.2,d.131.1.2	41380,41381
2gc6A	428	84.65	c.59.1.2,c.72.2.2	134952,134953
2bfgA	503	85.12	b.71.1.2,c.1.8.3	128423,128424
3c8fA	245	85.19		
3ipwA	325	85.94		
2aebA	322	87.67	c.42.1.1	126617
1l2uA	245	87.76	c.1.2.3	73516