# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qghA 425 4.26e-17 1twiA 434 5.79e-16 b.49.2.3,c.1.6.1 107399,107400 1tufA 434 1.50e-15 b.49.2.3,c.1.6.1 107335,107336 2p3eA 420 5.96e-15 2o0tA 467 9.31e-15 2j66A 428 6.37e-14 2nvaA 372 8.55e-14 7odcA 424 1.18e-13 b.49.2.3,c.1.6.1 26488,28650 1knwA 425 2.33e-13 b.49.2.3,c.1.6.1 90969,90970 2pljA 419 4.67e-13 2yxxA 386 4.83e-13 3gwqA 426 4.68e-07 2dy3A 361 7.81e-06 1vfsA 386 7.96e-06 b.49.2.2,c.1.6.1 108584,108585 1rcqA 357 7.99e-06 b.49.2.2,c.1.6.1 104882,104883 1xfcA 384 1.49e-05 1bd0A 388 2.88e-05 b.49.2.2,c.1.6.1 26480,28642 2vd8A 391 6.03e-05 3co8A 380 0.000142 3llxA 376 0.000209 3kw3A 376 0.000497 3e6eA 371 0.001757 3hurA 395 0.01016 3dhvA 512 1.752 3fceA 512 3.044 1t5hX 504 3.088 e.23.1.1 106449 1w8gA 234 3.200 3e7wA 511 4.036 3cw9A 504 4.837 e.23.1.1 157035 1mdbA 539 5.164 e.23.1.1 79008 1ff9A 450 8.769 c.2.1.3,d.81.1.2 30039,39954 1q0qA 406 8.860 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1obbA 480 9.203 c.2.1.5,d.162.1.2 86760,86761 1up7A 417 10.25 c.2.1.5,d.162.1.2 113374,113375 3iahA 256 10.43 1ygyA 529 10.43 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2e7jA 371 10.80 c.67.1.9 146704 1u8xX 472 11.16 c.2.1.5,d.162.1.2 107741,107742 3f1lA 252 11.56 2v7bA 529 12.19 1s6yA 450 12.56 c.2.1.5,d.162.1.2 105314,105315 3lhlA 287 13.14 2cyaA 364 13.52 3iieA 401 14.02 3i1jA 247 14.20 3eagA 326 14.21 3cpgA 282 14.54 1jvsA 400 14.80 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1j09A 468 14.92 a.97.1.1,c.26.1.1 77025,77026 3g7sA 549 15.04 1amuA 563 16.60 e.23.1.1 43351 2ja2A 498 17.01 1ct5A 256 17.75 c.1.6.2 28663 1ja9A 274 17.81 c.2.1.2 62817 1w6uA 302 19.27 c.2.1.2 114288 1x7gA 261 19.73 c.2.1.2 114929 2c81A 418 21.42 1tv8A 340 21.94 c.1.28.3 107352 1r0kA 388 23.74 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1yxmA 303 24.06 c.2.1.2 124192 1q1rA 431 24.28 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2h88A 621 24.44 1g0oA 283 25.60 c.2.1.2 60181 1ibjA 464 25.84 c.67.1.3 62162 1o69A 394 26.07 c.67.1.4 92560 3h14A 391 26.86 1o4sA 389 27.22 c.67.1.1 86620 2ef5A 290 27.97 2yutA 207 28.25 2fb2A 340 29.52 1bg6A 359 30.22 a.100.1.5,c.2.1.6 18810,30214 1pg4A 652 30.27 e.23.1.1 88067 2axqA 467 30.34 2ae2A 260 30.71 c.2.1.2 29945 2a4kA 263 32.09 c.2.1.2 126156 2q1sA 377 32.35 2r6jA 318 32.38 1bg6 359 32.86 3ezsA 376 33.15 1djuA 388 33.48 c.67.1.1 59116 2cybA 323 33.84 1uluA 261 34.67 c.2.1.2 113292 1vp4A 425 35.10 c.67.1.1 113935 1iy8A 267 36.31 c.2.1.2 83774 1vl8A 267 37.59 c.2.1.2 108733 2v03A 303 37.66 1n3lA 372 37.68 c.26.1.1 79966 1hyuA 521 38.95 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 3e03A 274 39.30 1ua7A 422 39.48 b.71.1.1,c.1.8.1 107759,107760 3iteA 562 39.56 1up6A 416 39.90 c.2.1.5,d.162.1.2 107976,107977 1gln 468 41.61 1qo8A 566 42.13 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1lci 550 42.78 2glxA 332 43.56 1vffA 423 44.75 c.1.8.4 120033 3h2zA 382 44.81 1xkqA 280 45.34 c.2.1.2 115417 1p77A 272 46.48 c.2.1.7,c.58.1.5 94214,94215 2ez2A 456 46.93 1q7bA 244 47.98 c.2.1.2 96026 1e39A 571 47.99 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 3guyA 230 48.12 2wzhA 737 48.47 2tpt 440 48.69 1bw0A 416 50.54 c.67.1.1 34385 1gegA 256 50.75 c.2.1.2 29888 2cmd 312 50.77 2o4cA 380 52.05 3gveA 341 52.18 2w70A 449 52.79 3ftbA 361 53.34 1v2dA 381 53.69 c.67.1.1 108281 1c4kA 730 54.24 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1kssA 571 54.53 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 3m1aA 281 54.64 2wklA 497 55.37 3edmA 259 56.10 2cycA 375 56.74 1w7lA 422 56.78 c.67.1.1 109226 1enp 312 57.58 3b8xA 390 58.72 3i23A 349 59.26 2pqmA 343 60.22 1gcoA 261 60.49 c.2.1.2 29884 2po3A 424 61.39 3dwgA 325 61.85 1cydA 244 62.35 c.2.1.2 29825 1t3iA 420 62.39 c.67.1.3 106354 1t4bA 367 62.49 c.2.1.3,d.81.1.1 106406,106407 3fefA 450 63.09 1hdoA 206 63.94 c.2.1.2 60965 2fnuA 375 64.44 c.67.1.4 133831 1o5iA 249 64.46 c.2.1.2 92499 1geeA 261 65.06 c.2.1.2 90509 1xseA 295 65.07 c.2.1.2 115925 2nt0A 497 65.39 b.71.1.2,c.1.8.3 138561,138562 2aebA 322 65.43 c.42.1.1 126617 1ax4A 467 66.88 c.67.1.2 34391 2v5cA 594 66.90 2zyjA 397 66.92 1k92A 455 66.93 c.26.2.1,d.210.1.1 68325,68326 1ohlA 342 67.40 c.1.10.3 87035 1j32A 388 67.57 c.67.1.1 77067 3l6eA 235 67.70 1vkmA 297 67.78 c.138.1.1 108670 3ioyA 319 67.84 3fvsA 422 68.67 1b16A 254 69.09 c.2.1.2 29875 1xg5A 279 69.46 c.2.1.2 115277 3e02A 311 69.49 1nffA 260 69.77 c.2.1.2 80457 1p2hA 571 69.79 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1vjtA 483 70.20 c.2.1.5,d.162.1.2 100833,100834 2z9wA 392 70.40 1ydyA 356 70.78 c.1.18.3 123006 3h5qA 436 72.10 2v3fA 505 72.67 b.71.1.2,c.1.8.3 152453,152454 1zoyA 622 73.11 1y0pA 571 73.65 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1u08A 386 73.93 c.67.1.1 107543 1ve1A 304 74.08 c.79.1.1 120007 3fdbA 377 74.22 1korA 400 74.85 c.26.2.1,d.210.1.1 72824,72825 3mggA 276 75.22 3eypA 469 75.30 3kvoA 346 75.51 3bb8A 437 75.90 2bd0A 244 76.05 c.2.1.2 128321 1xhlA 297 76.48 c.2.1.2 109591 2rfvA 398 76.61 1d7oA 297 76.70 c.2.1.2 29907 1b8gA 429 76.85 c.67.1.4 34499 3eywA 413 77.00 2gblA 519 77.26 c.37.1.11,c.37.1.11 134911,134912 2fuvA 549 77.36 1aq0A 306 78.13 c.1.8.3 28842 3igzB 561 78.56 2vvnA 737 78.72 a.246.1.1,c.1.8.10,d.92.2.3 153634,153635,153636 1mdoA 393 79.22 c.67.1.4 79013 2yzrA 330 81.28 3fg2P 404 81.51 3f9tA 397 81.58 2dsjA 423 82.03 1yzyA 413 82.07 c.146.1.1 124292 1fmtA 314 82.20 b.46.1.1,c.65.1.1 25758,34174 1xi9A 406 82.27 c.67.1.1 115355 2zklA 369 82.71 1z45A 699 83.39 b.30.5.4,c.2.1.2 124427,124428 3d3aA 612 84.26 1fmcA 255 84.56 c.2.1.2 29856 3f4lA 345 86.14 3fkdA 350 86.43 2hufA 393 86.74 1b9hA 388 86.98 c.67.1.4 34488 1eudA 311 87.02 c.2.1.8,c.23.4.1 30312,31140 1hxhA 253 87.83 c.2.1.2 76725 1t2dA 322 87.96 c.2.1.5,d.162.1.1 99084,99085 1ldg 316 88.27 1uhvA 500 89.05 b.71.1.2,c.1.8.3 99402,99403 2okjA 504 89.24