SAM_T02 Results for T0547
Please cite the following papers:
- Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R.
``What is the value added by human intervention in protein structure prediction?''
Proteins: Structure Function and Genetics 45(S5):86-91,2001
- Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R.
``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction''
Proteins: Structure Function and Genetics53(S6):491-496,15 Oct 2003
- Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus.
``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.''
Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003.
When SAM_T02 finishes, you should see links to
- Inputs and Multiple Alignments
- Secondary Structure Prediction
- Target model scores with annotation
- Template model scores with annotation
- Top Hits -- best scoring templates from all models
- Alignments for Top Hits
| Description |
Link to file |
Date |
|
Inputs and Multiple Alignments
|
Error: The submitted sequence was longer than 500 amino acids , or else was not an amino acid sequence. We suggest breaking long protein chains into different domains with blast or psiblast and submitting the domains separately. Alternatively, you can split long proteins into overlapping sections of less than 500 amino acids and submit them separately. Please do not submit DNA sequences - our server is not set up to handle them.
| Submitted sequence(s) |
T0547.a2m |
2010 May 19 9:03:57 |
Please cite the following papers:
- Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R.
``What is the value added by human intervention in protein structure prediction?''
Proteins: Structure Function and Genetics 45(S5):86-91,2001
- Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R.
``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction''
Proteins: Structure Function and Genetics53(S6):491-496,15 Oct 2003
- Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus.
``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.''
Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003.
SAM_T02 web system designed by Rachel Karchin and Kevin Karplus
Maintained by Kevin Karplus:
karplus@soe.ucsc.edu