# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wywA 230 6.64e-18 c.18.1.2 144566 1mugA 168 6.26e-17 1mugA c.18.1.2 31030 2c2pA 199 1.34e-14 2c2qA 199 1.59e-14 1ui0A 205 1.20e-03 c.18.1.2 99411 1vk2A 204 3.06e-03 c.18.1.2 100845 1l9gA 192 3.46e-03 c.18.1.2 84568 2d3yA 219 6.07e-03 1oe4A 247 8.37e-02 c.18.1.3 86895 3ikbA 198 1.71e-01 2yv8A 164 6.82e-01 2owrA 218 3.12e+00 2obnA 349 3.84e+00 2yv1A 294 5.12e+00 2qipA 165 6.07e+00 3aayA 277 6.50e+00 3hwiA 298 7.08e+00 1yaaA 412 7.38e+00 1ajsA c.67.1.1 34280 3i0pA 365 7.49e+00 3cg0A 140 7.61e+00 2btuA 346 8.10e+00 2p9jA 162 8.37e+00 3f4wA 211 8.42e+00 1a8pA 258 9.30e+00 b.43.4.2,c.25.1.1 25654,31544 3fw2A 150 1.06e+01 3crnA 132 1.29e+01 1n2zA 245 1.31e+01 c.92.2.2 79865 3hdvA 136 1.41e+01 3gjwA 350 1.44e+01 3dfrA 162 1.44e+01 c.71.1.1 34880 3dfr 162 1.45e+01 3dfr 1b2sD 90 1.52e+01 1ay7B c.9.1.1 30837 2rjnA 154 1.52e+01 1zbsA 291 1.54e+01 c.55.1.5,c.55.1.5 124870,124871 2purA 292 1.60e+01 1n4aA 252 1.62e+01 c.92.2.2 85317 2h9bA 312 1.62e+01 3js6A 355 1.65e+01 2nocA 99 1.67e+01 d.230.6.1 148323 2a6lA 292 1.68e+01 c.1.10.1 126285 3cx3A 284 1.71e+01 1ay7B 89 1.71e+01 1ay7B c.9.1.1 30836 6pfkA 319 1.77e+01 3pfk c.89.1.1 35583 1fexA 59 1.82e+01 a.4.1.3 59803 2ph0A 174 1.82e+01 2pqmA 343 1.86e+01 1zuhA 168 1.86e+01 3c97A 140 1.93e+01 3pfk 319 1.95e+01 3pfk 1sr8A 298 1.95e+01 e.54.1.1 105959 3l51B 166 2.01e+01 2ojpA 292 2.02e+01 2qdxA 257 2.03e+01 1brwA 433 2.03e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1dcfA 136 2.06e+01 1dcfA c.23.1.2 31124 3ifrA 508 2.19e+01 2a6nA 292 2.29e+01 c.1.10.1 126289 2f48A 555 2.30e+01 c.89.1.1 132915 1yvwA 115 2.31e+01 a.204.1.4 124122 2wawA 199 2.32e+01 3mhsE 96 2.32e+01 1v37A 177 2.35e+01 c.60.1.1 113497 3m5vA 301 2.37e+01 2nyuA 196 2.37e+01 2a22A 215 2.40e+01 d.159.1.7 126025 3irsA 291 2.40e+01 1yqzA 438 2.45e+01 2zw3A 226 2.47e+01 2ogxB 270 2.47e+01 2jfzA 255 2.48e+01 3bqwA 351 2.52e+01 1jl3A 139 2.57e+01 c.44.1.1 66826 2w51A 158 2.59e+01 2hqlA 110 2.59e+01 3lerA 301 2.60e+01 1dhpA 292 2.64e+01 1dhpA c.1.10.1 29097 2g0wA 296 2.64e+01 c.1.15.4 134503 2qezA 455 2.67e+01 1pfkA 320 2.74e+01 3pfk c.89.1.1 35575 1u1jA 765 2.74e+01 c.1.22.2,c.1.22.2 107590,107591 1ci3M 249 2.78e+01 1hcz b.2.6.1,b.84.2.2 22480,28266 2p75A 177 2.79e+01 3fg9A 156 2.81e+01 3h4tA 404 2.88e+01 1xdiA 499 2.92e+01 c.3.1.5,d.87.1.1 115160,115161 1qtrA 317 3.01e+01 1qtrA c.69.1.7 34660 2atsA 292 3.02e+01 c.1.10.1 127306 1iv8A 720 3.03e+01 b.71.1.1,c.1.8.1 76842,76843 1ta9A 450 3.10e+01 1u2eA 289 3.12e+01 1l7bA 92 3.20e+01 c.15.1.2 91053 2gffA 106 3.24e+01 1ltzA 297 3.25e+01 d.178.1.1 74254 1njhA 119 3.26e+01 b.128.1.1 85787 1vmaA 306 3.26e+01 a.24.13.1,c.37.1.10 108887,108888 2v6gA 364 3.27e+01 1uk8A 282 3.29e+01 c.69.1.10 107907 1brsD 89 3.31e+01 1ay7B c.9.1.1 30825 2og2A 359 3.31e+01 2a5hA 416 3.39e+01 1ogdA 131 3.44e+01 c.133.1.1 92893 3lopA 364 3.44e+01 2pfkA 320 3.47e+01 3pfk c.89.1.1 35577 2qtrA 189 3.58e+01 2jc4A 256 3.62e+01 1ybhA 590 3.64e+01 c.31.1.3,c.36.1.5,c.36.1.9 122891,122892,122893 3l0zA 350 3.64e+01 2ehhA 294 3.65e+01 1ivnA 190 3.74e+01 c.23.10.5 83719 1inlA 296 3.83e+01 c.66.1.17 66220 3fl8A 166 3.83e+01 3jsrA 119 3.84e+01 2vosA 487 3.84e+01 1b9hA 388 3.85e+01 1b9hA c.67.1.4 34488 1y7pA 223 3.87e+01 c.23.1.7,d.58.18.12 122708,122709 3dmyA 480 3.94e+01 2e1mB 130 3.97e+01 3aekA 437 3.99e+01 3he8A 149 4.05e+01 1i45A 248 4.22e+01 1amk c.1.1.1 61665 3brjA 175 4.23e+01 a.285.1.1 155511 3kjrA 511 4.25e+01 1neyA 247 4.27e+01 c.1.1.1 80449 1eyyA 510 4.29e+01 1eyyA c.82.1.1 35389 1tyeB 440 4.31e+01 b.1.15.1,c.62.1.1,g.16.2.1 112830,112831,112832 1ez0A 510 4.35e+01 1eyyA c.82.1.1 35385 1xviA 275 4.38e+01 c.108.1.10 116088 2iufA 688 4.41e+01 2ewsA 287 4.44e+01 c.55.1.14 146991 1nbuA 119 4.46e+01 d.96.1.3 91767 3gnlA 244 4.50e+01 2r5vA 357 4.51e+01 1cliA 345 4.52e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 2hldG 278 4.53e+01 2bl9A 238 4.53e+01 1tkiA 321 4.59e+01 1tkiA d.144.1.7 41638 2yzsA 315 4.65e+01 3c3pA 210 4.66e+01 1xvlA 321 4.70e+01 c.92.2.2 122380 1nr3A 122 4.76e+01 d.236.1.1 86092 7timA 247 4.78e+01 1amk c.1.1.1 28457 1svvA 359 4.89e+01 c.67.1.1 106054 2vdrB 461 4.92e+01 2h29A 189 4.93e+01 1u8xX 472 4.94e+01 c.2.1.5,d.162.1.2 107741,107742 1nv8A 284 4.94e+01 c.66.1.30 86224 2j13A 247 4.96e+01 c.6.2.3 137934 1cf2O 337 5.01e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 2aplA 157 5.02e+01 a.258.1.1 127132 2hf9A 226 5.05e+01 3enbA 222 5.20e+01 c.55.3.14 158189 1efyA 350 5.32e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1a19A 90 5.32e+01 1ay7B c.9.1.1 30831 1e2wA 251 5.42e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 3llcA 270 5.43e+01 1b27D 90 5.44e+01 1ay7B c.9.1.1 30840 1iirA 415 5.45e+01 1iirA c.87.1.5 62453 2go7A 207 5.49e+01 c.108.1.6 135434 2c0rA 362 5.52e+01 c.67.1.4 129604 2pk8A 103 5.54e+01 d.274.1.1 139707 2agaA 190 5.59e+01 3kizA 394 5.63e+01 3bh7B 352 5.66e+01 3kzfA 317 5.82e+01 3ghfA 120 5.85e+01 1uirA 314 5.94e+01 c.66.1.17 99429 1nbuC 119 6.00e+01 d.96.1.3 91769 1tk9A 188 6.03e+01 c.80.1.3 107082 1j3kA 280 6.04e+01 c.71.1.1 84070 2h2wA 312 6.05e+01 2itmA 484 6.13e+01 3c5vA 316 6.15e+01 1hleB 31 6.21e+01 1hleB 3cz5A 153 6.26e+01 3hjgA 213 6.33e+01 1ny9A 143 6.35e+01 a.181.1.1 86401 1jp4A 308 6.42e+01 1jp4A e.7.1.1 63223 1e6pA 499 6.43e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1zbfA 142 6.50e+01 c.55.3.1 124850 2g3wA 182 6.57e+01 c.52.1.33 147077 1goiA 499 6.58e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1tw3A 360 6.59e+01 a.4.5.29,c.66.1.12 107373,107374 2dumA 170 6.61e+01 1xhcA 367 6.61e+01 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 3lhfA 140 6.62e+01 3ihoA 138 6.63e+01 1s3eA 520 6.65e+01 c.3.1.2,d.16.1.5 98426,98427 1zjjA 263 6.65e+01 1txgA 335 6.69e+01 a.100.1.6,c.2.1.6 112775,112776 3a8jA 364 6.69e+01 4dfrA 159 6.71e+01 1vdrA c.71.1.1 34822 1r85A 379 6.71e+01 c.1.8.3 104839 3hnoA 419 6.72e+01 2za4B 90 6.73e+01 1ivhA 394 6.73e+01 3mdeA a.29.3.1,e.6.1.1 16608,42869 2azpA 318 6.75e+01 2j5cA 569 6.81e+01 1y56A 493 6.83e+01 3d40A 286 6.84e+01 1vloA 381 6.84e+01 b.44.2.1,d.250.1.1 108838,108839 1ng1 294 6.86e+01 1ng1 1pot 325 6.87e+01 1pot 1potA 325 6.87e+01 c.94.1.1 35807 1nqkA 381 6.87e+01 c.1.16.4 92050 3a8kA 364 6.91e+01 3ervA 236 6.91e+01 2nq5A 755 6.95e+01 1zosA 230 6.99e+01 3b7xA 134 7.01e+01 1b0aA 288 7.03e+01 1a4iA c.2.1.7,c.58.1.2 30286,33934 1kq3A 376 7.03e+01 e.22.1.2 68790 3mag 307 7.06e+01 3mag 1e15A 499 7.06e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 27810,29006,38440 1bdmA 327 7.07e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 2f07A 197 7.10e+01 2b1eA 564 7.10e+01 3graA 202 7.12e+01 1f2dA 341 7.12e+01 1f2dA c.79.1.1 35298 3gr3A 230 7.18e+01 1nrwA 288 7.21e+01 c.108.1.10 86128 2i7xA 717 7.30e+01 d.157.1.10 147560 1ks8A 433 7.32e+01 a.102.1.2 77519 2gm2A 132 7.35e+01 1zedA 484 7.39e+01 c.76.1.1 124980 1v39 322 7.49e+01 3mag 2h98A 313 7.52e+01 1h7xA 1025 7.58e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1q90A 292 7.63e+01 b.2.6.1,b.84.2.2,f.23.23.1 96238,96239,96240 3bjnA 165 7.68e+01 1h7wA 1025 7.71e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1ls1A 295 7.71e+01 a.24.13.1,c.37.1.10 78170,78171 2nxpA 156 7.75e+01 d.379.1.1 148504 2jfgA 445 7.84e+01 c.5.1.1,c.59.1.1,c.72.2.1 138306,138307,138308 3dnjA 85 7.84e+01 2blcA 238 7.98e+01 2djfC 69 8.00e+01