# List of top-scoring protein chains for T0545.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mugA 168 5.98e-23 1mugA c.18.1.2 31030 2rbaA 204 6.84e-23 1wywA 230 7.09e-23 c.18.1.2 144566 2c2pA 199 1.89e-16 2c2qA 199 3.23e-16 3ikbA 198 1.69e-13 2d3yA 219 1.91e-09 1ui0A 205 8.81e-07 c.18.1.2 99411 1l9gA 192 3.73e-06 c.18.1.2 84568 1vk2A 204 3.78e-06 c.18.1.2 100845 1oe4A 247 3.86e-02 c.18.1.3 86895 2yv8A 164 2.46e+00 3hb3A 558 2.89e+00 3ehbA 558 2.90e+00 2zhxA 238 3.33e+00 2d0dA 282 3.73e+00 1qleA 538 3.96e+00 2occA f.24.1.1 43620 2jqdA 169 4.65e+00 1uk8A 282 5.73e+00 c.69.1.10 107907 2j8xA 231 6.92e+00 c.18.1.1 145675 1ub3A 220 7.96e+00 c.1.10.1 88395 1t6nA 220 8.78e+00 c.37.1.19 106576 2z8uA 188 9.26e+00 1fa2A 498 9.96e+00 1byb c.1.8.1 28797 2fv8A 207 1.13e+01 c.37.1.8 134199 3cmgA 667 1.25e+01 2yyyA 343 1.34e+01 2p79A 177 1.37e+01 2gwgA 350 1.54e+01 c.1.9.15 135805 1uf2A 1019 1.56e+01 e.28.1.2 99289 2gcoA 201 1.57e+01 2sliA 679 1.60e+01 b.29.1.9,b.68.1.1 24274,27611 2ouwA 138 1.65e+01 a.152.1.4 149029 2je0A 149 1.77e+01 1z2cA 193 1.78e+01 c.37.1.8 124376 1cxzA 182 1.84e+01 1ctqA c.37.1.8 32048 3c7xA 196 1.87e+01 2pyyA 228 1.92e+01 1lb1B 192 1.97e+01 c.37.1.8 73786 3kz1E 182 1.97e+01 2vugA 389 1.97e+01 1x86B 196 1.97e+01 c.37.1.8 109506 1s1cA 183 1.98e+01 c.37.1.8 98340 3lxrA 185 2.02e+01 1pn3A 404 2.11e+01 c.87.1.5 94938 3h4tA 404 2.19e+01 1y5eA 169 2.21e+01 c.57.1.1 122632 2ip1A 432 2.25e+01 3kt0A 438 2.27e+01 3bzwA 274 2.31e+01 c.23.10.9 155792 2durA 253 2.34e+01 2p77A 177 2.36e+01 2ah6A 208 2.40e+01 1xcgB 178 2.41e+01 c.37.1.8 115122 1tx4B 177 2.41e+01 1ctqA c.37.1.8 32045 1ow3B 193 2.42e+01 c.37.1.8 87486 2p35A 259 2.43e+01 1cc0A 190 2.44e+01 1eesA c.37.1.8 32050 2pnmA 193 2.45e+01 1itxA 419 2.50e+01 c.1.8.5,d.26.3.1 71425,71426 3e0lA 455 2.52e+01 2pnlA 203 2.64e+01 3iu6A 147 2.67e+01 2prbA 196 2.70e+01 2p30A 177 2.75e+01 2dgqA 108 2.85e+01 2pxxA 215 2.89e+01 1zczA 464 2.93e+01 c.24.1.3,c.97.1.4 124923,124924 1xhoA 148 2.95e+01 d.79.1.2 115301 3a06A 376 2.98e+01 2p9zA 177 3.00e+01 2p78A 177 3.06e+01 3cf4A 807 3.06e+01 2p9fA 177 3.09e+01 2p6oA 177 3.20e+01 2p2yA 177 3.22e+01 2pa0A 177 3.23e+01 2p75A 177 3.23e+01 2ekbA 177 3.24e+01 2p6mA 177 3.25e+01 1v37A 177 3.25e+01 c.60.1.1 113497 2bueA 202 3.27e+01 2ekzA 177 3.32e+01 2hjsA 340 3.41e+01 c.2.1.3,d.81.1.1 136547,136548 1xtjA 386 3.42e+01 c.37.1.19,c.37.1.19 116024,116025 2dycA 158 3.43e+01 2enwA 177 3.48e+01 2owdA 177 3.55e+01 2b9lA 394 3.66e+01 3ifsA 453 3.71e+01 2nyuA 196 3.78e+01 1b0aA 288 3.88e+01 1a4iA c.2.1.7,c.58.1.2 30286,33934 2bf6A 449 3.95e+01 1fp1D 372 4.00e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 2vk5A 452 4.01e+01 2enuA 177 4.10e+01 2p9yA 177 4.15e+01 2p2zA 177 4.15e+01 3kb6A 334 4.20e+01 1xtiA 391 4.23e+01 c.37.1.19,c.37.1.19 116022,116023 1flzA 228 4.33e+01 3eugA c.18.1.1 31027 1xtkA 390 4.33e+01 c.37.1.19,c.37.1.19 116026,116027 3eugA 229 4.33e+01 3eugA c.18.1.1 31018 1eugA 229 4.42e+01 3eugA c.18.1.1 31021 1euiA 228 4.44e+01 3eugA c.18.1.1 31028 1uugA 229 4.44e+01 3eugA c.18.1.1 31023 1wy8A 89 4.46e+01 d.15.1.1 121437 2oweA 177 4.69e+01 3kjrA 511 4.74e+01 3iam6 181 4.82e+01 1ss1A 62 4.82e+01 a.8.1.1 98977 2c53A 244 5.09e+01 1ya9A 181 5.12e+01 2jwdA 59 5.15e+01 a.8.1.1 148228 1t6dA 315 5.25e+01 c.55.1.8,c.55.1.8 106560,106561 2j4rA 308 5.31e+01 c.55.1.8,c.55.1.8 147882,147883 1t6cA 315 5.36e+01 c.55.1.8,c.55.1.8 106558,106559 3i5cA 206 5.53e+01 1b2sD 90 5.55e+01 1ay7B c.9.1.1 30837 1d2eA 397 5.56e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1xb2A 409 5.59e+01 b.43.3.1,b.44.1.1,c.37.1.8 115054,115055,115056 2cf4A 332 5.59e+01 2yxgA 289 5.63e+01 2zzrA 397 5.70e+01 2dgpA 106 5.80e+01 3kl4A 433 5.80e+01 1qzxA 440 5.85e+01 a.24.13.1,a.36.1.1,c.37.1.10 96711,96712,96713 2wb3A 157 5.90e+01 1kacB 124 5.93e+01 1neu b.1.1.1 19707 3kefA 326 5.97e+01 1rsfA 126 6.03e+01 b.1.1.1 97809 3f7tA 328 6.03e+01 3gneA 252 6.05e+01 1tr8A 102 6.24e+01 1inlA 296 6.43e+01 c.66.1.17 66220 2dpxA 174 6.43e+01 1yqqA 277 6.45e+01 3cu5A 141 6.50e+01 1ee6A 197 6.56e+01 1ee6A b.80.1.1 28024 3gjwA 350 6.58e+01 2gjsA 176 6.59e+01 c.37.1.8 135287 3d0cA 314 6.71e+01 2v6gA 364 6.76e+01 2zkrj 203 6.85e+01 2rcwA 350 6.88e+01 a.41.1.1,d.166.1.2 151911,151912 2wabA 341 7.05e+01 2p5iA 288 7.09e+01 d.104.1.3 149248 1kbvA 327 7.14e+01 b.6.1.3,b.6.1.3 68395,68396 2waoA 341 7.15e+01 1ds6A 192 7.24e+01 1ctqA c.37.1.8 32006 2a22A 215 7.24e+01 d.159.1.7 126025 3i5bA 179 7.31e+01 1a19A 90 7.36e+01 1ay7B c.9.1.1 30831 1l6rA 227 7.39e+01 c.108.1.10 77768 2qhrL 218 7.44e+01 1nthA 458 7.47e+01 c.1.25.1 80730 2gjtA 295 7.48e+01 1narA 290 7.48e+01 c.1.8.5 28988 1r2jA 366 7.52e+01 a.29.3.1,e.6.1.1 96869,96870 2ej1A 519 7.52e+01 2e4tA 519 7.63e+01 1qvrA 854 7.72e+01 a.174.1.1,c.37.1.20,c.37.1.20 96432,96433,96434 2g59A 297 7.78e+01 2obnA 349 7.86e+01 1fp2A 352 7.88e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1ay7B 89 7.98e+01 1ay7B c.9.1.1 30836