Best Alignments for T0538

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2kruA/T0538-2kruA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2kruA/T0538-2kruA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9218e-113.53e-25
3aetB/T0538-3aetB-t2k-local-adpstyle1.a2m 3aetB/T0538-3aetB-t2k-local-adpstyle1.al 6.3167e-021.40e-07
3aeuB/T0538-3aeuB-t2k-local-adpstyle1.a2m 3aeuB/T0538-3aeuB-t2k-local-adpstyle1.al 6.3167e-021.40e-07
3aekB/T0538-3aekB-t2k-local-adpstyle1.a2m 3aekB/T0538-3aekB-t2k-local-adpstyle1.al 6.3372e-021.42e-07
1id3B/T0538-1id3B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1id3B/T0538-1id3B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5789e-011.79e-07 a.22.1.1
1a7wA/T0538-1a7wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a7wA/T0538-1a7wA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7528e-014.97e-12 a.22.1.2
2da4A/T0538-2da4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2da4A/T0538-2da4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2541e+001.24e-05
1jfiB/T0538-1jfiB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jfiB/T0538-1jfiB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3988e+001.47e-05 1jfiB a.22.1.3
3h7eA/T0538-3h7eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3h7eA/T0538-3h7eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6769e+008.43e-03
2c9oA/T0538-2c9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c9oA/T0538-2c9oA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7260e+001.02e-08

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001