# TARGET T0538 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0538.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 23 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.004 0.951 0.001 0.002 0.005 0.001 0.001 0.001 0.027 0.003 0.005 0.002 2 N 0.001 0.048 0.846 0.001 0.011 0.018 0.001 0.001 0.010 0.033 0.021 0.001 0.013 3 L 0.001 0.045 0.341 0.001 0.153 0.062 0.001 0.001 0.013 0.205 0.162 0.008 0.008 4 R 0.001 0.013 0.389 0.002 0.161 0.045 0.001 0.001 0.011 0.141 0.221 0.005 0.011 5 W 0.001 0.053 0.592 0.001 0.072 0.042 0.001 0.001 0.008 0.124 0.094 0.003 0.011 6 T 0.001 0.003 0.699 0.001 0.005 0.081 0.001 0.001 0.001 0.196 0.012 0.001 0.002 7 S 0.001 0.001 0.002 0.001 0.004 0.972 0.001 0.001 0.001 0.003 0.018 0.001 0.001 8 E 0.001 0.001 0.001 0.001 0.004 0.984 0.001 0.001 0.001 0.002 0.009 0.001 0.001 9 A 0.001 0.001 0.001 0.001 0.005 0.992 0.001 0.001 0.001 0.001 0.002 0.001 0.001 10 K 0.001 0.001 0.003 0.001 0.003 0.992 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 T 0.001 0.001 0.001 0.001 0.006 0.984 0.001 0.001 0.001 0.001 0.007 0.001 0.001 12 K 0.001 0.001 0.002 0.001 0.005 0.977 0.001 0.001 0.001 0.001 0.014 0.001 0.001 13 L 0.001 0.001 0.002 0.001 0.008 0.969 0.001 0.001 0.001 0.003 0.017 0.001 0.001 14 K 0.001 0.001 0.007 0.001 0.011 0.904 0.001 0.001 0.001 0.008 0.070 0.001 0.001 15 N 0.001 0.002 0.019 0.001 0.015 0.723 0.001 0.001 0.001 0.029 0.211 0.001 0.001 16 I 0.001 0.006 0.463 0.001 0.009 0.217 0.001 0.001 0.002 0.244 0.057 0.002 0.001 17 P 0.001 0.004 0.399 0.001 0.095 0.180 0.001 0.001 0.002 0.091 0.220 0.001 0.007 18 F 0.001 0.010 0.125 0.001 0.179 0.231 0.001 0.001 0.009 0.109 0.326 0.003 0.004 19 F 0.002 0.026 0.118 0.001 0.300 0.197 0.001 0.001 0.018 0.113 0.191 0.019 0.013 20 A 0.004 0.029 0.379 0.001 0.056 0.263 0.003 0.002 0.043 0.117 0.059 0.003 0.041 21 R 0.001 0.003 0.550 0.002 0.015 0.294 0.001 0.001 0.007 0.097 0.020 0.008 0.005 22 S 0.001 0.001 0.009 0.001 0.032 0.905 0.001 0.001 0.001 0.010 0.044 0.001 0.001 23 Q 0.001 0.001 0.007 0.001 0.049 0.890 0.001 0.001 0.001 0.014 0.039 0.001 0.001 24 A 0.001 0.001 0.011 0.001 0.026 0.937 0.001 0.001 0.001 0.010 0.014 0.001 0.001 25 K 0.001 0.001 0.010 0.001 0.012 0.966 0.001 0.001 0.001 0.002 0.008 0.001 0.001 26 A 0.001 0.001 0.012 0.001 0.013 0.946 0.001 0.001 0.001 0.014 0.013 0.001 0.001 27 R 0.001 0.001 0.008 0.001 0.005 0.964 0.001 0.001 0.001 0.004 0.017 0.001 0.001 28 I 0.001 0.001 0.003 0.001 0.002 0.985 0.001 0.001 0.001 0.003 0.006 0.001 0.001 29 E 0.001 0.001 0.005 0.001 0.001 0.990 0.001 0.001 0.001 0.002 0.002 0.001 0.001 30 Q 0.001 0.001 0.003 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.003 0.001 0.001 31 L 0.001 0.001 0.002 0.001 0.002 0.989 0.001 0.001 0.001 0.002 0.005 0.001 0.001 32 A 0.001 0.001 0.002 0.001 0.004 0.982 0.001 0.001 0.001 0.002 0.009 0.001 0.001 33 R 0.001 0.001 0.004 0.001 0.008 0.948 0.001 0.001 0.001 0.003 0.036 0.001 0.001 34 Q 0.001 0.001 0.007 0.001 0.008 0.879 0.001 0.001 0.001 0.011 0.095 0.001 0.001 35 A 0.001 0.001 0.018 0.001 0.010 0.394 0.001 0.001 0.001 0.032 0.544 0.001 0.001 36 E 0.001 0.001 0.065 0.001 0.020 0.086 0.001 0.001 0.001 0.065 0.762 0.001 0.001 37 Q 0.001 0.004 0.762 0.001 0.014 0.041 0.001 0.001 0.013 0.123 0.035 0.001 0.006 38 D 0.001 0.019 0.527 0.004 0.019 0.016 0.001 0.001 0.131 0.214 0.035 0.023 0.011 39 I 0.001 0.074 0.325 0.004 0.013 0.021 0.006 0.003 0.269 0.093 0.018 0.012 0.162 40 V 0.002 0.090 0.392 0.002 0.002 0.027 0.005 0.005 0.204 0.106 0.005 0.127 0.033 41 T 0.001 0.029 0.633 0.001 0.001 0.058 0.001 0.001 0.082 0.096 0.002 0.001 0.098 42 P 0.001 0.001 0.002 0.001 0.002 0.989 0.001 0.001 0.001 0.003 0.004 0.001 0.001 43 E 0.001 0.001 0.001 0.001 0.003 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 44 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 Q 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 48 A 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 49 R 0.001 0.001 0.002 0.001 0.002 0.984 0.001 0.001 0.001 0.001 0.011 0.001 0.001 50 L 0.001 0.001 0.002 0.001 0.004 0.960 0.001 0.001 0.001 0.004 0.029 0.001 0.001 51 E 0.001 0.001 0.011 0.001 0.006 0.879 0.001 0.001 0.001 0.015 0.088 0.001 0.001 52 F 0.001 0.004 0.053 0.001 0.006 0.578 0.001 0.001 0.001 0.065 0.290 0.001 0.002 53 G 0.001 0.004 0.466 0.001 0.005 0.120 0.001 0.001 0.001 0.084 0.316 0.002 0.002 54 Q 0.001 0.001 0.963 0.001 0.001 0.009 0.001 0.001 0.001 0.015 0.007 0.001 0.002