# List of top-scoring protein chains for T0538.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2kruA 63 1.72e-08 3aeuB 525 3.68e-07 3aetB 525 3.68e-07 3aekB 525 3.71e-07 2hd0A 128 7.25e-02 3hhsA 694 2.23e+00 2wmmA 162 3.31e+00 3hsiA 458 4.16e+00 3ibpA 302 5.14e+00 1z14A 549 5.15e+00 1z1cA 587 5.23e+00 b.121.5.2 124350 1p4cA 380 5.94e+00 c.1.4.1 94100 3giyA 380 6.00e+00 1s1hQ 76 7.09e+00 i.1.1.1 105168 3jyvQ 80 7.92e+00 1id3B 102 8.38e+00 a.22.1.1 66113 1rrzA 86 8.75e+00 a.7.10.1 105086 1jrrA 382 8.76e+00 e.1.1.1 63256 2arrA 382 8.85e+00 1rieA 129 8.88e+00 b.33.1.1 24427 1v30A 124 9.44e+00 d.269.1.1 113496 1p3gB 102 1.07e+01 a.22.1.1 94007 2nraC 276 1.10e+01 a.4.5.10,a.4.5.10 148360,148361 2hueC 84 1.10e+01 a.22.1.1 136776 2jv4A 54 1.11e+01 3lv0A 267 1.12e+01 2qqcB 112 1.14e+01 2qqdB 112 1.16e+01 1n13B 113 1.16e+01 1w42A 101 1.18e+01 d.79.3.1 145813 3lfoA 101 1.20e+01 1p3pB 102 1.22e+01 a.22.1.1 94058 3bpqB 88 1.22e+01 1aoiB 87 1.24e+01 1aoiB a.22.1.1 16470 1h7mA 102 1.28e+01 d.79.3.1 83485 1hioD 76 1.28e+01 a.22.1.1 16469 2ysfA 40 1.30e+01 k.22.1.1 153748 1w41A 101 1.32e+01 d.79.3.1 145812 1ru8A 232 1.34e+01 c.26.2.1 97849 3h7eA 237 1.35e+01 1bccE 196 1.36e+01 1rie b.33.1.1,f.23.12.1 24431,43699 1n2mA 165 1.40e+01 d.155.1.2 85278 2qqdC 166 1.40e+01 1ppjE 196 1.40e+01 b.33.1.1,f.23.12.1 104260,104261 1w40A 101 1.43e+01 d.79.3.1 145811 3cjwA 244 1.48e+01 1ldfA 281 1.48e+01 f.19.1.1 73845 1fx8A 281 1.60e+01 f.19.1.1 43651 2atxA 194 1.61e+01 c.37.1.8 127315 1w3eX 101 1.63e+01 d.79.3.1 145810 2hioD 103 1.65e+01 1aoiB a.22.1.1 16468 3d2oA 257 1.66e+01 2yr1A 257 1.67e+01 1kx5B 102 1.68e+01 a.22.1.1 77594 2pyoB 102 1.68e+01 a.22.1.1 149950 1tzyD 103 1.68e+01 a.22.1.1 107533 2nqbB 103 1.68e+01 a.22.1.1 148341 1nhyA 219 1.74e+01 a.45.1.1,c.47.1.5 80520,80521 1p3iB 102 1.76e+01 a.22.1.1 94015 1ul3A 112 1.79e+01 d.58.5.1 99534 3c1bB 102 1.80e+01 a.22.1.1 155852 2gl3A 136 1.84e+01 3cz7A 364 1.87e+01 3dskA 495 1.88e+01 3dsiA 495 1.89e+01 1p3fB 102 1.92e+01 a.22.1.1 93999 3d35A 388 1.99e+01 2yv9A 291 2.05e+01 3ic7A 126 2.06e+01 2hdvA 111 2.15e+01 1zuaX 317 2.15e+01 3l1wA 257 2.18e+01 1mioB 458 2.20e+01 1qguB c.92.2.3 35602 2bujA 317 2.23e+01 2zfnA 460 2.25e+01 3g5bA 405 2.35e+01 1oglA 283 2.36e+01 a.204.1.1 92922 2pjpA 121 2.37e+01 1p3bB 102 2.41e+01 a.22.1.1 93989 2eg2A 112 2.54e+01 2da4A 80 2.54e+01 2r9yA 430 2.61e+01 1omwG 74 2.62e+01 a.137.3.1 87090 2qnsB 71 2.68e+01 a.137.3.1 150954 1gp2G 71 2.69e+01 1tbgE a.137.3.1 19635 1xhmB 77 2.69e+01 a.137.3.1 122006 2wylA 360 2.73e+01 1q9sA 149 2.85e+01 b.43.5.1 96309 2aieP 203 2.94e+01 2aiaA 203 2.95e+01 2dguA 103 3.07e+01 1vdwA 254 3.11e+01 e.7.1.1 100569 2ph1A 262 3.14e+01 1p3oB 102 3.17e+01 a.22.1.1 94050 2grjA 192 3.19e+01 1twuA 139 3.20e+01 d.32.1.8 107413 1f47A 17 3.20e+01 1jh3A 107 3.30e+01 d.66.1.4 71661 1lm6A 215 3.44e+01 d.167.1.1 84628 3gxqA 54 3.46e+01 1awdA 94 3.59e+01 d.15.4.1 37673 2kl8A 85 3.75e+01 2errA 109 3.83e+01 d.58.7.1 132303 2cq3A 103 3.90e+01 d.58.7.1 130714 2zv6A 401 3.93e+01 1cfaA 71 4.27e+01 1kjs a.50.1.1 17793 1ffkV 143 4.35e+01 1ffkV c.9.2.1 30849 1m5yA 408 4.40e+01 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1p1mA 406 4.48e+01 b.92.1.4,c.1.9.9 87696,87697 2js9A 99 4.50e+01 1j6pA 418 4.52e+01 b.92.1.4,c.1.9.9 77089,77090 2fhqA 141 4.57e+01 b.45.1.1 133497 2fe9A 86 4.75e+01 3fozA 316 4.77e+01 2d3dA 88 4.82e+01 2es6A 101 4.95e+01 2f53D 193 4.97e+01 b.1.1.1,b.1.1.2 145138,145139 3g6eY 142 5.00e+01 2gknA 136 5.03e+01 1dtxA 59 5.16e+01 g.8.1.1 44551 2vywA 148 5.22e+01 2qzxA 342 5.22e+01 1xtkA 390 5.37e+01 c.37.1.19,c.37.1.19 116026,116027 2e8eA 132 5.40e+01 1ii8B 174 5.45e+01 1f2tB 1nhoA 85 5.47e+01 c.47.1.1 91885 2rimA 457 5.58e+01 3ju5A 370 5.60e+01 1sqbK 56 5.63e+01 f.23.15.1 105905 2j67A 178 5.75e+01 3d1lA 266 5.79e+01 3hqaA 73 5.94e+01 1kjsA 74 5.99e+01 a.50.1.1 17792 1t6nA 220 6.09e+01 c.37.1.19 106576 1aatA 411 6.09e+01 c.67.1.1 34275 2j289 430 6.15e+01 2cstA 411 6.19e+01 1ajsA c.67.1.1 34273 3iwtA 178 6.20e+01 1h9aA 485 6.26e+01 1dpgA c.2.1.3,d.81.1.5 60816,60817 1u7iA 136 6.30e+01 d.32.1.7 107724 1dpgA 485 6.31e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1mzbA 136 6.35e+01 a.4.5.42 91497 2bgkA 278 6.47e+01 c.2.1.2 128480 2a61A 145 6.55e+01 a.4.5.28 126187 1h93A 485 6.58e+01 1dpgA c.2.1.3,d.81.1.5 60807,60808 2dpgA 485 6.60e+01 c.2.1.3,d.81.1.5 30076,39991 1e7yA 485 6.65e+01 1dpgA c.2.1.3,d.81.1.5 30077,39992 2j9cA 119 6.72e+01 2j9dE 119 6.73e+01 1sr8A 298 6.75e+01 e.54.1.1 105959 3g3sA 249 6.75e+01 2b6gA 119 6.77e+01 1dpfA 180 7.05e+01 1ctqA c.37.1.8 32046 1demA 60 7.21e+01 g.8.1.1 44556 3g6eI 70 7.36e+01 1ti6B 274 7.37e+01 b.3.5.1,d.58.1.5 106976,106977 2rljA 16 7.45e+01 1qy7A 112 7.47e+01 d.58.5.1 96575 2gukA 120 7.71e+01 d.360.1.1 147182 2qzcA 214 7.72e+01 1tx4B 177 7.73e+01 1ctqA c.37.1.8 32045 2jcbA 200 7.80e+01 1xcgB 178 7.89e+01 c.37.1.8 115122 2fwtA 125 7.90e+01 1t8tA 271 7.93e+01 c.37.1.5 106685 1t8uA 272 7.94e+01 c.37.1.5 106687