# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2kruA 63 7.73e-09 2jv4A 54 1.17e+00 1id3B 102 1.47e+00 a.22.1.1 66113 1mzbA 136 2.42e+00 a.4.5.42 91497 2kl8A 85 3.69e+00 3bpqB 88 4.49e+00 1tzyD 103 5.49e+00 a.22.1.1 107533 2hueC 84 6.31e+00 a.22.1.1 136776 1aoiB 87 6.72e+00 1aoiB a.22.1.1 16470 2p0tA 176 7.22e+00 a.290.1.1 149141 3fozA 316 7.37e+00 2vofA 157 7.46e+00 2fwtA 125 8.03e+00 3h7eA 237 8.62e+00 1xseA 295 9.34e+00 c.2.1.2 115925 2hd0A 128 9.52e+00 3dwfA 278 9.77e+00 2atxA 194 1.01e+01 c.37.1.8 127315 1oglA 283 1.17e+01 a.204.1.1 92922 3g49A 277 1.18e+01 2w83C 77 1.22e+01 3gvfA 196 1.38e+01 2w57A 150 1.44e+01 2wmmA 162 1.47e+01 1b01A 45 1.48e+01 2cpgA a.43.1.3 17458 1jfiB 179 1.48e+01 1jfiB a.22.1.3 62937 2ethA 154 1.53e+01 a.4.5.28 132358 2p0sA 143 1.63e+01 c.94.1.3 149140 1v30A 124 1.74e+01 d.269.1.1 113496 2j01I 149 1.77e+01 d.99.1.1,d.100.1.1 137862,137863 2cpgA 45 1.78e+01 2cpgA a.43.1.3 17455 1h7mA 102 1.89e+01 d.79.3.1 83485 2j67A 178 1.94e+01 2pmzP 48 1.95e+01 2waqP 48 2.00e+01 1a9nB 96 2.01e+01 1urnA d.58.7.1 39165 3e6mA 161 2.03e+01 1zx4A 192 2.05e+01 1nkd 65 2.07e+01 1nkd 1nkdA 65 2.07e+01 a.30.1.1 16974 3ec8A 166 2.25e+01 2p64A 52 2.25e+01 2hzdA 82 2.25e+01 1w41A 101 2.35e+01 d.79.3.1 145812 1gp2G 71 2.36e+01 1tbgE a.137.3.1 19635 1kq8A 100 2.39e+01 a.4.5.14 68797 2pjpA 121 2.56e+01 1b3qA 379 2.66e+01 1b3qA a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 3hqaA 73 2.74e+01 3i1hA 161 2.76e+01 2nyxA 168 2.77e+01 3bnvA 152 2.99e+01 2f6mB 109 3.01e+01 a.2.17.2 133052 2vm6A 150 3.05e+01 1jrrA 382 3.05e+01 e.1.1.1 63256 2gpiA 91 3.05e+01 d.354.1.1 147154 2doqD 94 3.23e+01 1y66A 52 3.30e+01 1rqtA 37 3.39e+01 a.108.1.1 97771 2gjlA 328 3.40e+01 2f8xM 63 3.54e+01 1uelB 48 3.55e+01 j.105.1.1 99266 1v8yA 170 3.60e+01 d.113.1.1 113581 3ff6A 760 3.64e+01 1ueoA 63 3.65e+01 j.107.1.1 99269 3eizA 196 3.66e+01 1an0A 190 3.78e+01 1ctqA c.37.1.8 32066 3hsiA 458 3.84e+01 1p9cA 45 4.03e+01 j.105.1.1 94386 1kdxB 28 4.04e+01 1rrzA 86 4.14e+01 a.7.10.1 105086 2vqeI 128 4.19e+01 d.14.1.1 153433 1fjgI 128 4.20e+01 1fjfI d.14.1.1 37559 3khaA 95 4.24e+01 2arrA 382 4.29e+01 1am4D 177 4.39e+01 1ctqA c.37.1.8 32068 3gxqA 54 4.49e+01 3d35A 388 4.51e+01 1audA 101 4.58e+01 1urnA d.58.7.1 39156 2z3xA 63 4.63e+01 2j2sA 72 4.75e+01 1sr8A 298 4.76e+01 e.54.1.1 105959 2uubI 128 4.76e+01 2iy2A 72 4.80e+01 d.17.3.1 147834 3dxqA 301 5.41e+01 2hepA 85 5.64e+01 a.2.21.1 147271 1ifp 44 5.70e+01 1ifp 1ifpA 44 5.70e+01 h.1.4.1 45570 1a4rA 191 5.70e+01 1ctqA c.37.1.8 32063 1v0jA 399 5.72e+01 2gf4A 100 5.79e+01 a.8.10.1 135074 3gcgA 182 5.88e+01 1eesA 178 5.96e+01 1eesA c.37.1.8 32073 3bi7A 212 6.08e+01 b.122.1.12 155298 1pwbA 177 6.11e+01 d.169.1.1,h.1.1.1 95212,95213 3cjwA 244 6.16e+01 1f5yA 85 6.19e+01 1f5yA g.12.1.1,g.12.1.1 44610,44611 3i05A 395 6.28e+01 1ru8A 232 6.61e+01 c.26.2.1 97849 2wgmA 89 6.66e+01 1i5kC 30 6.68e+01 1uwdA 103 6.68e+01 d.52.8.2 113447 3bt3A 148 6.70e+01 1u02A 239 6.71e+01 c.108.1.15 107538 2gkmA 136 6.81e+01 3eweB 564 6.82e+01 2jo7A 224 6.91e+01 1hgvA 46 6.93e+01 1hh0A h.1.4.1 61033 1hh0A 46 6.93e+01 1hh0A h.1.4.1 61035 1yceA 89 6.94e+01 3c64A 179 7.04e+01 2axtJ 40 7.05e+01 f.23.32.1 144934 3bz1J 40 7.05e+01 2dgkA 452 7.09e+01 1id1A 153 7.10e+01 1id1A c.2.1.9 62286 1w85I 49 7.22e+01 a.9.1.1 114347 2jvgA 72 7.30e+01 1z56A 246 7.47e+01 1wqgA 185 7.64e+01 d.67.3.1 145821 1nvpB 57 7.68e+01 a.32.1.1 92211 1yqfA 203 7.85e+01 d.25.1.1 123880 1p94A 76 7.91e+01 a.43.1.3 94380 3k13A 300 7.94e+01