# TARGET T0538 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0538.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 9.40932 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.009 0.781 0.004 0.002 0.004 0.001 0.001 0.010 0.152 0.012 0.014 0.011 2 N 0.001 0.018 0.806 0.006 0.004 0.004 0.001 0.001 0.029 0.069 0.020 0.006 0.036 3 L 0.003 0.052 0.574 0.003 0.010 0.009 0.004 0.001 0.096 0.136 0.019 0.037 0.054 4 R 0.002 0.055 0.581 0.002 0.006 0.010 0.004 0.001 0.149 0.076 0.013 0.059 0.043 5 W 0.001 0.060 0.674 0.001 0.004 0.013 0.002 0.003 0.114 0.042 0.011 0.009 0.067 6 T 0.001 0.009 0.758 0.001 0.007 0.086 0.001 0.001 0.022 0.090 0.010 0.006 0.010 7 S 0.001 0.001 0.005 0.001 0.032 0.917 0.001 0.001 0.001 0.007 0.037 0.001 0.001 8 E 0.001 0.001 0.004 0.001 0.027 0.945 0.001 0.001 0.001 0.002 0.021 0.001 0.001 9 A 0.001 0.001 0.003 0.001 0.015 0.973 0.001 0.001 0.001 0.001 0.008 0.001 0.001 10 K 0.001 0.001 0.007 0.001 0.016 0.969 0.001 0.001 0.001 0.003 0.005 0.001 0.001 11 T 0.001 0.001 0.003 0.001 0.021 0.959 0.001 0.001 0.001 0.002 0.014 0.001 0.001 12 K 0.001 0.001 0.004 0.001 0.031 0.916 0.001 0.001 0.001 0.002 0.045 0.001 0.001 13 L 0.001 0.001 0.018 0.001 0.024 0.880 0.001 0.001 0.001 0.008 0.067 0.001 0.001 14 K 0.001 0.001 0.019 0.001 0.035 0.525 0.001 0.001 0.001 0.016 0.402 0.001 0.001 15 N 0.001 0.001 0.039 0.001 0.018 0.141 0.001 0.001 0.001 0.048 0.752 0.001 0.001 16 I 0.001 0.003 0.592 0.001 0.001 0.008 0.001 0.001 0.003 0.385 0.006 0.003 0.001 17 P 0.001 0.006 0.869 0.005 0.003 0.010 0.001 0.001 0.020 0.049 0.023 0.001 0.013 18 F 0.008 0.033 0.156 0.007 0.025 0.085 0.027 0.081 0.391 0.058 0.049 0.048 0.032 19 F 0.038 0.024 0.067 0.006 0.030 0.158 0.065 0.157 0.304 0.027 0.043 0.034 0.046 20 A 0.052 0.020 0.124 0.004 0.012 0.271 0.052 0.080 0.182 0.029 0.028 0.057 0.088 21 R 0.012 0.004 0.110 0.007 0.007 0.669 0.004 0.022 0.077 0.024 0.019 0.019 0.027 22 S 0.001 0.001 0.009 0.001 0.007 0.956 0.001 0.001 0.002 0.006 0.015 0.001 0.001 23 Q 0.001 0.001 0.006 0.001 0.012 0.967 0.001 0.001 0.001 0.002 0.008 0.001 0.002 24 A 0.001 0.001 0.011 0.001 0.012 0.960 0.001 0.001 0.001 0.004 0.009 0.001 0.001 25 K 0.001 0.001 0.007 0.001 0.004 0.976 0.001 0.001 0.001 0.003 0.007 0.001 0.001 26 A 0.001 0.001 0.005 0.001 0.002 0.970 0.001 0.001 0.001 0.007 0.013 0.001 0.001 27 R 0.001 0.001 0.009 0.001 0.001 0.968 0.001 0.001 0.001 0.003 0.017 0.001 0.001 28 I 0.001 0.001 0.004 0.001 0.001 0.989 0.001 0.001 0.001 0.002 0.004 0.001 0.001 29 E 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 A 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 33 R 0.001 0.001 0.001 0.001 0.003 0.971 0.001 0.001 0.001 0.001 0.024 0.001 0.001 34 Q 0.001 0.001 0.005 0.001 0.005 0.873 0.001 0.001 0.001 0.002 0.114 0.001 0.001 35 A 0.001 0.001 0.022 0.001 0.013 0.526 0.001 0.001 0.001 0.022 0.416 0.001 0.001 36 E 0.001 0.001 0.093 0.001 0.017 0.080 0.001 0.001 0.001 0.035 0.773 0.001 0.001 37 Q 0.001 0.007 0.541 0.001 0.035 0.054 0.001 0.001 0.003 0.253 0.102 0.001 0.003 38 D 0.001 0.006 0.361 0.002 0.052 0.030 0.001 0.001 0.019 0.347 0.168 0.006 0.008 39 I 0.001 0.056 0.419 0.001 0.037 0.024 0.003 0.001 0.084 0.163 0.137 0.013 0.060 40 V 0.001 0.131 0.616 0.001 0.003 0.008 0.001 0.002 0.078 0.108 0.011 0.029 0.012 41 T 0.001 0.012 0.922 0.001 0.001 0.010 0.001 0.001 0.012 0.025 0.002 0.001 0.014 42 P 0.001 0.001 0.001 0.001 0.009 0.983 0.001 0.001 0.001 0.001 0.006 0.001 0.001 43 E 0.001 0.001 0.001 0.001 0.004 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 L 0.001 0.001 0.001 0.001 0.004 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 Q 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 48 A 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 49 R 0.001 0.001 0.003 0.001 0.002 0.987 0.001 0.001 0.001 0.001 0.006 0.001 0.001 50 L 0.001 0.001 0.004 0.001 0.006 0.969 0.001 0.001 0.001 0.003 0.018 0.001 0.001 51 E 0.001 0.001 0.010 0.001 0.012 0.918 0.001 0.001 0.001 0.003 0.054 0.001 0.001 52 F 0.001 0.003 0.042 0.001 0.013 0.602 0.001 0.001 0.001 0.023 0.314 0.001 0.002 53 G 0.001 0.006 0.358 0.001 0.011 0.108 0.001 0.001 0.001 0.067 0.444 0.002 0.002 54 Q 0.001 0.003 0.904 0.001 0.002 0.011 0.001 0.001 0.001 0.064 0.010 0.002 0.003