# TARGET T0538 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0538.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 9.40932 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.008 0.002 0.001 0.006 0.012 0.010 0.961 2 N 0.047 0.021 0.009 0.015 0.024 0.045 0.838 3 L 0.094 0.018 0.013 0.022 0.122 0.025 0.707 4 R 0.109 0.018 0.030 0.037 0.068 0.061 0.677 5 W 0.072 0.055 0.016 0.067 0.128 0.028 0.634 6 T 0.009 0.005 0.004 0.071 0.064 0.006 0.840 7 S 0.001 0.001 0.017 0.965 0.003 0.011 0.003 8 E 0.001 0.001 0.015 0.973 0.001 0.009 0.002 9 A 0.001 0.001 0.012 0.979 0.001 0.006 0.003 10 K 0.001 0.001 0.004 0.989 0.001 0.004 0.001 11 T 0.001 0.001 0.011 0.969 0.001 0.018 0.001 12 K 0.001 0.001 0.014 0.940 0.001 0.042 0.002 13 L 0.001 0.001 0.055 0.854 0.010 0.069 0.011 14 K 0.001 0.002 0.077 0.548 0.012 0.354 0.006 15 N 0.002 0.001 0.046 0.286 0.132 0.506 0.027 16 I 0.006 0.002 0.002 0.017 0.739 0.011 0.224 17 P 0.056 0.010 0.012 0.041 0.117 0.071 0.693 18 F 0.509 0.066 0.036 0.067 0.123 0.060 0.138 19 F 0.668 0.031 0.046 0.076 0.064 0.034 0.081 20 A 0.415 0.023 0.047 0.149 0.050 0.033 0.283 21 R 0.055 0.005 0.038 0.501 0.059 0.038 0.304 22 S 0.003 0.001 0.031 0.902 0.020 0.023 0.020 23 Q 0.002 0.001 0.036 0.936 0.003 0.016 0.008 24 A 0.002 0.001 0.025 0.942 0.003 0.018 0.009 25 K 0.001 0.001 0.006 0.968 0.002 0.016 0.005 26 A 0.001 0.001 0.002 0.971 0.003 0.022 0.001 27 R 0.001 0.001 0.001 0.965 0.004 0.022 0.007 28 I 0.001 0.001 0.001 0.992 0.001 0.004 0.002 29 E 0.001 0.001 0.001 0.996 0.001 0.002 0.001 30 Q 0.001 0.001 0.002 0.996 0.001 0.002 0.001 31 L 0.001 0.001 0.002 0.991 0.001 0.005 0.001 32 A 0.001 0.001 0.008 0.968 0.002 0.019 0.003 33 R 0.003 0.001 0.013 0.884 0.004 0.084 0.011 34 Q 0.009 0.001 0.034 0.691 0.036 0.150 0.079 35 A 0.009 0.005 0.041 0.286 0.061 0.504 0.095 36 E 0.007 0.003 0.040 0.064 0.079 0.674 0.134 37 Q 0.032 0.008 0.031 0.014 0.282 0.041 0.593 38 D 0.107 0.005 0.048 0.018 0.296 0.083 0.444 39 I 0.388 0.043 0.034 0.022 0.113 0.079 0.322 40 V 0.307 0.109 0.002 0.014 0.104 0.005 0.459 41 T 0.066 0.015 0.001 0.011 0.064 0.001 0.842 42 P 0.001 0.001 0.010 0.980 0.001 0.007 0.002 43 E 0.001 0.001 0.007 0.987 0.001 0.005 0.001 44 L 0.001 0.001 0.017 0.976 0.001 0.002 0.004 45 V 0.001 0.001 0.006 0.986 0.001 0.005 0.002 46 E 0.001 0.001 0.002 0.985 0.001 0.012 0.001 47 Q 0.001 0.001 0.003 0.981 0.001 0.013 0.002 48 A 0.001 0.001 0.004 0.970 0.002 0.012 0.011 49 R 0.004 0.003 0.013 0.951 0.004 0.011 0.014 50 L 0.001 0.001 0.013 0.957 0.002 0.023 0.003 51 E 0.001 0.001 0.008 0.889 0.004 0.090 0.009 52 F 0.001 0.002 0.009 0.614 0.029 0.299 0.046 53 G 0.003 0.003 0.009 0.117 0.092 0.451 0.324 54 Q 0.005 0.002 0.005 0.014 0.076 0.024 0.873