# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2kruA 63 1.02e-12 3bpqB 88 8.47e-02 1tq6A 413 4.75e-01 c.37.1.8 107202 1cv2A 296 6.23e-01 1bn6A c.69.1.8 34680 1g8iA 190 8.97e-01 1rec a.39.1.5 60363 1b67A 68 9.28e-01 1a7w a.22.1.2 16474 1khyA 148 9.40e-01 a.174.1.1 77410 2hd0A 128 1.06e+00 1w41A 101 1.33e+00 d.79.3.1 145812 1h7mA 102 1.37e+00 d.79.3.1 83485 1tq4A 413 1.38e+00 c.37.1.8 107201 1mj5A 302 1.40e+00 c.69.1.8 91285 3h7eA 237 1.46e+00 1pamA 686 1.83e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 2cpgA 45 1.89e+00 2cpgA a.43.1.3 17455 1evlA 401 1.90e+00 1qf6A c.51.1.1,d.104.1.1 33202,40751 1vfgA 390 2.09e+00 a.173.1.1,d.218.1.4 108570,108571 1a7w 69 2.72e+00 1a7w 1a7wA 69 2.72e+00 a.22.1.2 16477 1zuaX 317 3.02e+00 1xuqA 212 3.16e+00 1eexA 554 3.53e+00 1dioA c.1.19.3 29650 1d3cA 686 3.55e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1wy7A 207 3.93e+00 c.66.1.32 121433 3cz7A 364 4.20e+00 3bmvA 683 4.37e+00 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 155416,155417,155418,155419 2pjpA 121 4.42e+00 3cnqS 266 4.59e+00 3f49S 266 4.81e+00 1y9wA 140 5.00e+00 d.108.1.1 122783 2kl8A 85 5.76e+00 1tzyD 103 5.80e+00 a.22.1.1 107533 1kx5B 102 5.92e+00 a.22.1.1 77594 2bw2A 140 5.95e+00 2rcvA 202 6.20e+00 1qf6A 642 6.79e+00 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1q2lA 939 6.85e+00 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 118731,118732,118733,118734 2ce7A 476 6.94e+00 a.269.1.1,c.37.1.20 130312,130313 1d3gA 367 6.98e+00 1d3gA c.1.4.1 28600 3d35A 388 7.10e+00 2yr1A 257 7.17e+00 2da4A 80 7.32e+00 3g9dA 297 7.39e+00 2qs9A 194 7.51e+00 1ru8A 232 7.51e+00 c.26.2.1 97849 2ip1A 432 7.60e+00 1xmxA 385 7.62e+00 c.52.1.26 115568 2hueC 84 7.75e+00 a.22.1.1 136776 1aocA 175 7.86e+00 1aocA g.17.1.5 44817 3kvlA 390 7.95e+00 3cetA 334 8.06e+00 1g57A 217 8.22e+00 1g57A d.115.1.2 60253 2b0mA 393 8.25e+00 c.1.4.1 127644 1hfeL 421 8.30e+00 1fehA c.96.1.1,d.58.1.5 36018,39001 2ezhA 75 8.58e+00 a.4.1.2 16029 1j6pA 418 8.66e+00 b.92.1.4,c.1.9.9 77089,77090 1t0fA 276 9.31e+00 a.4.5.27,c.52.1.16 112195,112196 1k2xA 177 9.38e+00 d.153.1.5 90929 1f1zA 273 9.72e+00 1f1zA a.4.5.27,c.52.1.16 16081,33334 1y66A 52 9.79e+00 1wn0A 145 9.82e+00 a.24.10.2 121070 1ass 159 9.83e+00 1a6dA 1assA 159 9.83e+00 c.8.5.2 30818 1mxgA 435 1.00e+01 b.71.1.1,c.1.8.1 85193,85194 2o14A 375 1.02e+01 b.18.1.32,c.23.10.8 148544,148545 1o0wA 252 1.02e+01 a.149.1.1,d.50.1.1 80751,80752 3c0bA 334 1.03e+01 2wmmA 162 1.03e+01 3fh2A 146 1.03e+01 2wzgA 525 1.04e+01 1eyvA 156 1.05e+01 1eyvA a.79.1.1 18446 1ug2A 95 1.05e+01 a.4.1.3 107823 3hyjA 198 1.06e+01 1qjtA 99 1.07e+01 1eh2 a.39.1.6 17335 3khaA 95 1.08e+01 2zfnA 460 1.09e+01 1yt8A 539 1.10e+01 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2cklA 108 1.12e+01 1cdzA 96 1.12e+01 1cdzA c.15.1.1 30925 3k05A 200 1.14e+01 3gxqA 54 1.16e+01 3i05A 395 1.20e+01 1iqcA 308 1.28e+01 a.3.1.5,a.3.1.5 66266,66267 2gptA 523 1.28e+01 3e0kA 150 1.30e+01 2atxA 194 1.32e+01 c.37.1.8 127315 2ii3A 262 1.33e+01 2kc8A 98 1.37e+01 2o7sA 523 1.39e+01 2vofA 157 1.40e+01 1rie 129 1.43e+01 1rie 1rieA 129 1.43e+01 b.33.1.1 24427 3f4aA 169 1.49e+01 3i1hA 161 1.50e+01 2hyjA 200 1.51e+01 a.4.1.9,a.121.1.1 147456,147457 3c3pA 210 1.54e+01 2qzcA 214 1.55e+01 2rimA 457 1.55e+01 2vkjA 106 1.60e+01 3hqsA 409 1.61e+01 3kkiA 409 1.61e+01 2vm6A 150 1.64e+01 2q0sA 216 1.68e+01 1jfiB 179 1.73e+01 1jfiB a.22.1.3 62937 3ix7A 134 1.75e+01 1sr8A 298 1.76e+01 e.54.1.1 105959 1b79A 119 1.84e+01 1b79A a.81.1.1 18451 3kt0A 438 1.89e+01 1r45A 204 1.89e+01 d.166.1.1 111683 1i1rB 181 1.89e+01 1i1rB a.26.1.1 61548 2qx5A 661 1.92e+01 1wxqA 397 1.92e+01 c.37.1.8,d.15.10.2 121406,121407 1s1eA 224 1.93e+01 a.39.1.5 112007 1f1eA 154 1.94e+01 a.22.1.2 64927 2d13A 227 1.97e+01 c.26.2.1 131121 3hufA 325 2.03e+01 3gycA 393 2.04e+01 3kbqA 172 2.04e+01 1wy5A 317 2.05e+01 c.26.2.5,d.229.1.1 121428,121429 3ktfA 103 2.07e+01 1o8rA 94 2.07e+01 d.234.1.1 86677 1wqgA 185 2.08e+01 d.67.3.1 145821 1v9vA 114 2.09e+01 a.29.10.1 119898 3jszA 525 2.12e+01 3c64A 179 2.14e+01 2do1A 55 2.16e+01 a.140.2.1 131595 1u02A 239 2.16e+01 c.108.1.15 107538 1w5tA 412 2.20e+01 a.4.5.11,c.37.1.20 114255,114256 1v2zA 111 2.21e+01 a.186.1.1 108300 2vq9A 148 2.21e+01 1to2E 281 2.22e+01 c.41.1.1 112595 2oolA 337 2.26e+01 d.110.2.1,d.110.3.9 148932,148933 2q01A 497 2.26e+01 1y81A 138 2.28e+01 c.2.1.8 122731 1s6cA 183 2.30e+01 a.39.1.5 98594 2adoA 196 2.34e+01 2ppqA 322 2.44e+01 d.144.1.6 149782 1gp8A 40 2.47e+01 2gp8A j.58.1.1 46342 2it1A 362 2.48e+01 2vt1B 93 2.49e+01 2dg7A 195 2.50e+01 3g6eY 142 2.51e+01 1zj8A 566 2.54e+01 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 146003,146004,146005,146006 2etsA 128 2.54e+01 a.24.26.1 132371 3byiA 214 2.54e+01 1nf3A 195 2.57e+01 c.37.1.8 85594 3eqzA 135 2.57e+01 2etxA 209 2.61e+01 2jvgA 72 2.62e+01 1k4iA 233 2.66e+01 d.115.1.2 72056 3l3eA 107 2.73e+01 2of7A 260 2.77e+01 1oglA 283 2.78e+01 a.204.1.1 92922 3cnlA 262 2.79e+01 3fesA 145 2.80e+01 2fp1A 166 2.80e+01 a.130.1.4 133891 2f6lA 166 2.81e+01 a.130.1.4 133049 3kjhA 254 2.82e+01 1utg 70 2.85e+01 1utg 1utgA 70 2.85e+01 a.101.1.1 18813 1h3oA 75 2.86e+01 a.22.1.3 76644 3c01E 98 2.93e+01 1ydgA 211 2.94e+01 c.23.5.8 116614 1mzbA 136 2.96e+01 a.4.5.42 91497 2wk9A 389 2.97e+01 3fkcA 116 2.98e+01 3hkxA 283 3.01e+01 3fybA 104 3.02e+01 1ny6A 267 3.15e+01 c.37.1.20 92321 2q4fA 149 3.20e+01 a.24.10.2 139847 1yviA 149 3.20e+01 a.24.10.2 124099 1m5yA 408 3.22e+01 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1e6cA 173 3.25e+01 1shkA c.37.1.2 59296 3hwuA 147 3.26e+01 1vqoI 162 3.31e+01 a.4.7.1 120370 1jh3A 107 3.33e+01 d.66.1.4 71661 1ppjE 196 3.37e+01 b.33.1.1,f.23.12.1 104260,104261 1n1bA 549 3.39e+01 a.102.4.1,a.128.1.3 79799,79800 2vywA 148 3.41e+01 2yv9A 291 3.45e+01 2daeA 75 3.46e+01 3gd5A 323 3.52e+01 1aszB 490 3.53e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1uumA 372 3.66e+01 c.1.4.1 100010 2vxzA 165 3.68e+01 1qsgA 265 3.69e+01 1eny c.2.1.2 29935 1tksA 204 3.74e+01 d.115.1.2 107114 1tafA 68 3.76e+01 1tafA a.22.1.3 16481 2opoA 86 3.78e+01 a.39.1.10 139209 1fsgA 233 3.81e+01 1qk3A c.61.1.1 34029 1fadA 99 3.82e+01 1fadA a.77.1.2 18428 1lv7A 257 3.82e+01 c.37.1.20 78232 2scpA 174 3.91e+01 2scpA a.39.1.5 17256 3hhhA 116 3.92e+01 2ioyA 283 3.97e+01 1a9xA 1058 4.11e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 2ac3A 316 4.15e+01 1qhoA 686 4.19e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2ivyA 101 4.19e+01 d.58.58.1 147817 2bykB 128 4.23e+01 a.22.1.3 129487 1p1mA 406 4.24e+01 b.92.1.4,c.1.9.9 87696,87697 1ne9A 335 4.26e+01 d.108.1.4,d.108.1.4 91839,91840 1gq6A 313 4.36e+01 c.42.1.1 70341 1cs0A 1073 4.38e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1bh6A 274 4.39e+01 1gci c.41.1.1 32487 3dsbA 157 4.42e+01 1nvpB 57 4.43e+01 a.32.1.1 92211 1k61A 60 4.45e+01 a.4.1.1 77270 2q4uA 272 4.47e+01 2c9oA 456 4.49e+01 3hz7A 87 4.50e+01 1w85I 49 4.50e+01 a.9.1.1 114347 1jj2X 240 4.50e+01 1ffkV c.9.2.1 63109 3gkrA 336 4.51e+01 3cmaY 240 4.54e+01 c.9.2.1 156794 1vqoY 241 4.57e+01 c.9.2.1 120386 3i3vA 405 4.58e+01 1yrnB 83 4.59e+01 1akhB a.4.1.1 15986 3fozA 316 4.63e+01 3kheA 191 4.64e+01 1ukxA 137 4.64e+01 d.20.1.3 107919 2ggvA 56 4.64e+01 1f75A 249 4.71e+01 1f75A c.101.1.1 59662 3iu7A 288 4.73e+01 3fblA 82 4.81e+01 2c29D 337 4.82e+01 3hsiA 458 4.82e+01 2k8hA 110 4.85e+01 2wk7A 393 4.86e+01 1mqsA 671 4.88e+01 e.25.1.1 79414 3lnlA 370 4.90e+01 2o35A 105 4.92e+01 a.293.1.1 148566 2pjwH 88 4.93e+01 2px7A 236 4.95e+01 1pv1A 299 5.02e+01 c.69.1.34 111639 1aoyA 78 5.03e+01 a.4.5.3 16087 1ecfA 504 5.06e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1eovA 487 5.06e+01 1b8aA b.40.4.1,d.104.1.1 25239,40760 1s1pA 331 5.10e+01 c.1.7.1 98350 3k31A 296 5.24e+01 1ql3A 99 5.24e+01 1ycc a.3.1.1 15822 1sv0A 85 5.25e+01 a.60.1.1 106035 3c6bA 299 5.28e+01 2qi2A 347 5.32e+01 b.38.4.1,c.55.4.2,d.79.3.2 150800,150801,150802 1t62A 166 5.35e+01 b.122.1.4 106541 1h8mA 140 5.39e+01 1h8mA d.110.4.1 60782 3czcA 110 5.43e+01 1ldfA 281 5.53e+01 f.19.1.1 73845 2hzdA 82 5.54e+01 3cyjA 372 5.58e+01 1n87A 56 5.59e+01 g.44.1.2 85390 2idgA 175 5.59e+01 a.184.1.1 147627 2j6lA 500 5.62e+01 3bjuA 521 5.63e+01 2npoA 207 5.64e+01 b.81.1.8 148338 2kheA 89 5.73e+01 1zn8A 180 5.73e+01 c.61.1.1 125376 1sjjA 863 5.74e+01 i.15.1.1 98894 1kzyC 259 5.77e+01 c.15.1.4,c.15.1.4 73383,73384 1h97A 147 5.80e+01 1h97A a.1.1.2 60812 3d6kA 422 5.82e+01 1yirA 408 5.82e+01 c.1.17.2,d.41.2.2 123330,123331 1k3eA 156 5.86e+01 d.198.1.1 68103 2d28C 149 5.88e+01 d.52.10.1 146450 2i6lA 320 5.89e+01 1omoA 322 5.90e+01 c.2.1.13 104017 2bo1A 101 5.91e+01 d.79.3.1 146161 1q5dA 419 5.98e+01 a.104.1.1 95891 1y1nA 291 5.99e+01 2pbqA 178 6.01e+01 2ztmA 260 6.03e+01 3e7lA 63 6.13e+01 2p5sA 199 6.15e+01 1guuA 52 6.19e+01 a.4.1.3 83332 2d27A 149 6.25e+01 d.52.10.1 146449 2nydA 370 6.27e+01 1g291 372 6.27e+01 1g291 2vroA 532 6.32e+01 1nhyA 219 6.32e+01 a.45.1.1,c.47.1.5 80520,80521 3crjA 199 6.35e+01 1mgtA 174 6.43e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1gp2G 71 6.46e+01 1tbgE a.137.3.1 19635 1xqoA 256 6.47e+01 a.96.1.6 115853 2g7lA 243 6.49e+01 a.4.1.9,a.121.1.1 134734,134735 1winA 143 6.51e+01 d.43.2.1 114678 1goxA 369 6.52e+01 c.1.4.1 28607 1gox 370 6.55e+01 1gox 2o0i1 180 6.73e+01 1j3mA 129 6.81e+01 d.129.7.1 103836 2jv3A 110 6.84e+01 1i5gA 144 6.86e+01 1ewxA c.47.1.10 61784 1ebdC 41 6.87e+01 1ebdC a.9.1.1 16355 3hhsA 694 6.93e+01 1o1yA 239 7.03e+01 c.23.16.1 86554 1sedA 117 7.09e+01 a.219.1.1 105449 2h7cA 542 7.09e+01 c.69.1.1 136207 2qo3A 915 7.10e+01 1cjbA 231 7.20e+01 1qk3A c.61.1.1 34079 1qk8A 146 7.23e+01 1ewxA c.47.1.10 33061 3g5oB 102 7.24e+01 2igd 61 7.25e+01 2igd 2igdA 61 7.25e+01 d.15.7.1 37821 2py6A 409 7.30e+01 c.66.1.56 149932 1vkcA 158 7.35e+01 d.108.1.1 113663 2rduA 387 7.39e+01 1hh1A 143 7.40e+01 1gefA c.52.1.18 61036 3d2oA 257 7.42e+01 2p91A 285 7.44e+01 2rgiA 98 7.44e+01 2voyK 32 7.46e+01 2cdnA 201 7.49e+01 c.37.1.1 130289 3dthA 372 7.52e+01 1hwtC 81 7.52e+01 1hwtC g.38.1.1,h.1.3.1 45085,45518 3e1bZ 213 7.54e+01 2j0vA 212 7.54e+01 2qjcA 262 7.60e+01 2e87A 357 7.64e+01 2c5sA 413 7.66e+01 c.26.2.6,d.308.1.1 129950,129951 1oruA 195 7.68e+01 b.58.1.2 93464 2nscA 109 7.71e+01 2beqD 48 7.72e+01 1ywmA 200 7.72e+01 2v1nA 111 7.74e+01 2bsqA 146 7.76e+01 c.120.1.1 129098 2is9A 204 7.77e+01 1id1A 153 7.81e+01 1id1A c.2.1.9 62286 2nx4A 194 7.82e+01 2yw3A 207 7.84e+01 3ez2A 398 7.85e+01 1sra 151 7.85e+01 1sra 1sraA 151 7.85e+01 a.39.1.3 17190 2iyvA 184 7.96e+01 c.37.1.2 137812 1o8xA 146 7.99e+01 c.47.1.10 86681