# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2kruA 63 8.91e-13 2kl8A 85 4.70e-01 3gvfA 196 5.55e-01 3bpqB 88 6.61e-01 3eizA 196 7.57e-01 3bnwA 181 1.42e+00 3h7eA 237 1.48e+00 1h7mA 102 1.86e+00 d.79.3.1 83485 1nb9A 147 1.97e+00 b.43.5.1 85515 1w41A 101 2.69e+00 d.79.3.1 145812 1pu1A 94 3.02e+00 d.266.1.1 104307 2hd0A 128 3.07e+00 1iq6A 134 3.37e+00 d.38.1.4 76755 2r6vA 191 3.46e+00 1g8iA 190 4.43e+00 1rec a.39.1.5 60363 1ru8A 232 5.52e+00 c.26.2.1 97849 1wy7A 207 6.79e+00 c.66.1.32 121433 2pjpA 121 6.92e+00 1oglA 283 7.01e+00 a.204.1.1 92922 1dtxA 59 7.15e+00 g.8.1.1 44551 2yzvA 303 7.21e+00 2i4rA 102 7.25e+00 c.149.1.1 147501 2qkpA 151 8.10e+00 1mzbA 136 9.00e+00 a.4.5.42 91497 2da4A 80 9.04e+00 2cwcA 303 9.43e+00 1y66A 52 9.54e+00 1rie 129 9.72e+00 1rie 1rieA 129 9.72e+00 b.33.1.1 24427 3fozA 316 1.05e+01 1fadA 99 1.10e+01 1fadA a.77.1.2 18428 1aocA 175 1.12e+01 1aocA g.17.1.5 44817 1wxqA 397 1.19e+01 c.37.1.8,d.15.10.2 121406,121407 3gxqA 54 1.22e+01 1tq6A 413 1.30e+01 c.37.1.8 107202 3kvlA 390 1.31e+01 2cpgA 45 1.41e+01 2cpgA a.43.1.3 17455 3e0kA 150 1.41e+01 1zj8A 566 1.45e+01 d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 146003,146004,146005,146006 2qmiA 447 1.46e+01 1l7bA 92 1.48e+01 c.15.1.2 91053 2hdvA 111 1.60e+01 2vm6A 150 1.65e+01 1j3mA 129 1.71e+01 d.129.7.1 103836 3hsiA 458 1.72e+01 2vofA 157 1.75e+01 1wwiA 148 1.75e+01 a.22.1.4 121362 2rprA 87 1.82e+01 2ioyA 283 1.92e+01 1nhyA 219 1.98e+01 a.45.1.1,c.47.1.5 80520,80521 2b0mA 393 1.98e+01 c.1.4.1 127644 1iybA 208 2.00e+01 d.124.1.1 90720 2dg7A 195 2.01e+01 1qp8A 303 2.03e+01 1qp8A c.2.1.4,c.23.12.1 30092,31352 2fyuK 56 2.04e+01 f.23.15.1 145179 2kc8A 98 2.05e+01 2qi2A 347 2.06e+01 b.38.4.1,c.55.4.2,d.79.3.2 150800,150801,150802 3i4qA 176 2.08e+01 3i1hA 161 2.08e+01 1jyoE 105 2.13e+01 d.184.1.2 67487 2d27A 149 2.13e+01 d.52.10.1 146449 2au7A 175 2.16e+01 1l0lK 56 2.17e+01 f.23.15.1 84497 2atxA 194 2.23e+01 c.37.1.8 127315 2gpiA 91 2.30e+01 d.354.1.1 147154 2fgsA 179 2.30e+01 1kx5B 102 2.34e+01 a.22.1.1 77594 1v30A 124 2.42e+01 d.269.1.1 113496 1hzfA 367 2.44e+01 a.102.4.4 76731 1uumA 372 2.58e+01 c.1.4.1 100010 1qsgA 265 2.64e+01 1eny c.2.1.2 29935 1rpyA 114 2.66e+01 d.93.1.1 97718 1eovA 487 2.67e+01 1b8aA b.40.4.1,d.104.1.1 25239,40760 2kcnA 55 2.69e+01 3eazA 106 2.71e+01 1tq4A 413 2.72e+01 c.37.1.8 107201 1vfgA 390 2.73e+01 a.173.1.1,d.218.1.4 108570,108571 2grjA 192 2.80e+01 1tzyD 103 2.81e+01 a.22.1.1 107533 2e87A 357 2.88e+01 1kjsA 74 2.90e+01 a.50.1.1 17792 3he8A 149 3.01e+01 3h8uA 125 3.02e+01 1wj2A 78 3.03e+01 g.79.1.1 114689 1aqb 183 3.17e+01 1aqb 2cc3A 150 3.19e+01 d.17.4.26 146384 1bazA 53 3.30e+01 1bazA a.43.1.1 17421 2jvgA 72 3.32e+01 3f95A 193 3.37e+01 2zkoA 73 3.41e+01 1k2xA 177 3.42e+01 d.153.1.5 90929 3ez7A 398 3.42e+01 1i40A 175 3.46e+01 b.40.5.1 66024 2uxyA 341 3.49e+01 2z0aA 79 3.50e+01 3cokA 278 3.66e+01 3knvA 141 3.66e+01 1rrzA 86 3.68e+01 a.7.10.1 105086 1y9wA 140 3.72e+01 d.108.1.1 122783 2wzgA 525 3.74e+01 2hueC 84 3.78e+01 a.22.1.1 136776 1iujA 106 3.82e+01 d.58.4.5 90701 1ueoA 63 3.83e+01 j.107.1.1 99269 2nscA 109 3.93e+01 1yirA 408 3.95e+01 c.1.17.2,d.41.2.2 123330,123331 3lxjA 136 4.02e+01 2occF 98 4.07e+01 2occF g.41.5.3 45256 3hqsA 409 4.20e+01 3kkiA 409 4.20e+01 1d3gA 367 4.27e+01 1d3gA c.1.4.1 28600 1yrnA 61 4.36e+01 1akhA a.4.1.1 15981 2vvdA 177 4.40e+01 1w85I 49 4.41e+01 a.9.1.1 114347 2uubI 128 4.45e+01 1mgtA 174 4.47e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 2vqeI 128 4.54e+01 d.14.1.1 153433 2ivyA 101 4.55e+01 d.58.58.1 147817 1u02A 239 4.63e+01 c.108.1.15 107538 1sr8A 298 4.64e+01 e.54.1.1 105959 1p1mA 406 4.66e+01 b.92.1.4,c.1.9.9 87696,87697 1vqoD 177 4.67e+01 d.77.1.1 120365 2ww4A 283 4.79e+01 3ilfA 268 4.80e+01 3jszA 525 4.80e+01 2hddA 61 4.80e+01 2hddA a.4.1.1 15971 3ix7A 134 4.85e+01 1enh 54 4.90e+01 2hddA 1akhA 61 4.94e+01 1akhA a.4.1.1 15980 2aydA 76 5.03e+01 3a1sA 258 5.08e+01 2vveA 254 5.11e+01 1v54F 98 5.18e+01 g.41.5.3 100327 2fl7A 232 5.26e+01 1fjgI 128 5.29e+01 1fjfI d.14.1.1 37559 2g80A 253 5.37e+01 c.108.1.22 134741 1j6pA 418 5.40e+01 b.92.1.4,c.1.9.9 77089,77090 2i6lA 320 5.50e+01 3fblA 82 5.57e+01 1jggA 60 5.63e+01 2hddA a.4.1.1 62950 1kaeA 434 5.81e+01 c.82.1.2 72247 3d2fA 675 5.81e+01 1q6hA 224 5.82e+01 d.26.1.1 95975 1jpaA 312 5.88e+01 d.144.1.7 67011 1aszB 490 5.96e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 2fk5A 200 6.01e+01 1kf6C 130 6.03e+01 f.21.2.2 72399 1oj4A 283 6.04e+01 d.14.1.5,d.58.26.5 93083,93084 2o66A 135 6.07e+01 2qxlA 658 6.08e+01 2f5gA 133 6.17e+01 d.58.57.1 132991 2do1A 55 6.28e+01 a.140.2.1 131595 1ppjE 196 6.29e+01 b.33.1.1,f.23.12.1 104260,104261 1k75A 434 6.32e+01 c.82.1.2 68253 1jh3A 107 6.32e+01 d.66.1.4 71661 2vy1A 194 6.33e+01 3d1lA 266 6.36e+01 3f49S 266 6.36e+01 1dszB 85 6.69e+01 2nllB g.39.1.2 45108 2ce7A 476 6.71e+01 a.269.1.1,c.37.1.20 130312,130313 1evlA 401 6.80e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 2o3lA 85 6.90e+01 a.69.4.1 148579 1dugA 234 6.92e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1omoA 322 6.94e+01 c.2.1.13 104017 1v0dA 329 6.95e+01 d.4.1.7 108204 1bplB 294 6.98e+01 1bli b.71.1.1 27716 1hwtC 81 7.06e+01 1hwtC g.38.1.1,h.1.3.1 45085,45518 1ig3A 263 7.13e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 2p4pA 86 7.13e+01 d.145.1.4 149217 2j00I 128 7.15e+01 d.14.1.1 137847 3khaA 95 7.29e+01 1rroA 108 7.35e+01 a.39.1.4 17195 1gz2A 142 7.39e+01 d.169.1.1 83392 2j01I 149 7.40e+01 d.99.1.1,d.100.1.1 137862,137863 1r0wA 286 7.41e+01 c.37.1.12 96754 1efdN 266 7.44e+01 1efdN c.92.2.1 35597 3ktmA 191 7.44e+01 2hahA 116 7.44e+01 2e67A 264 7.46e+01 2feaA 236 7.51e+01 c.108.1.20 133327 3bqpA 80 7.52e+01 1s0uA 408 7.55e+01 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 2ztmA 260 7.59e+01 3ef8A 150 7.62e+01 d.17.4.28 158127 1vllA 334 7.68e+01 c.2.1.13 108834 3e61A 277 7.70e+01 1lv7A 257 7.86e+01 c.37.1.20 78232