# List of top-scoring protein chains for T0532.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cghA 516 1.29e-57 a.118.8.6 156618 3gzsA 515 7.16e-56 3ejnA 474 1.88e-52 a.118.8.6 158180 3ehmA 532 1.85e-48 3fdhA 499 2.28e-41 3i4gA 528 2.26e-35 3jq0A 493 8.29e-34 3kezA 461 1.03e-33 3jq1A 481 2.02e-33 3ihvA 535 2.17e-32 3l22A 441 6.98e-30 3iv0A 481 1.70e-29 3lewA 495 2.00e-26 3hdxA 478 6.07e-26 3jysA 499 2.38e-25 3ckcA 527 2.39e-25 a.118.8.6 156736 1tiaA 279 1.44e+00 c.69.1.17 34737 2wqhA 125 1.48e+00 1na0A 125 2.79e+00 k.38.1.1 85479 1bwvA 493 3.05e+00 1burA c.1.14.1,d.58.9.1 29372,39278 2hyzA 136 3.18e+00 2qr4A 587 5.12e+00 2o2kA 355 5.98e+00 1yr2A 741 7.56e+00 2vtbB 525 7.62e+00 2e0wA 556 7.92e+00 d.153.1.6 131957 1wovA 250 8.61e+00 a.132.1.1 121124 1fizA 263 1.23e+01 5ptp 1o7xA 377 1.26e+01 a.103.1.1 81171 3hurA 395 1.42e+01 2pc4A 369 1.45e+01 1a5cA 368 1.45e+01 1fbaA c.1.10.1 29148 2no8A 86 1.52e+01 3iam5 207 1.71e+01 1wevA 88 1.75e+01 g.50.1.2 114566 2ellA 168 1.81e+01 1y8gA 327 1.91e+01 1zmuA 327 2.05e+01 3fu7B 559 2.10e+01 3dkhA 559 2.11e+01 2q9oA 559 2.18e+01 b.6.1.3,b.6.1.3,b.6.1.3 150149,150150,150151 1lehA 364 2.28e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 3iecA 319 2.35e+01 2r0iA 327 2.39e+01 1tiiA 190 2.55e+01 1lt3A d.166.1.1 42238 2wzjA 327 2.61e+01 1qhmA 624 2.67e+01 1cm5A c.7.1.1 30677 2bjuA 453 2.69e+01 b.50.1.2 128633 1j72A 347 2.90e+01 d.109.1.1,d.109.1.1,d.109.1.1 84127,84128,84129 1jhwA 347 2.95e+01 d.109.1.1,d.109.1.1,d.109.1.1 71662,71663,71664 1pfzA 380 2.97e+01 1smrA b.50.1.2 26881 1zmvA 327 3.31e+01 1q5jA 249 3.40e+01 f.13.1.1 95898 1dfkA 830 4.01e+01 1lvk b.34.3.1,c.37.1.9 24573,32170 1dflA 831 4.07e+01 1lvk b.34.3.1,c.37.1.9 24574,32171 1sjjA 863 4.07e+01 i.15.1.1 98894 1jeyB 565 4.26e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 1kk8A 837 4.28e+01 b.34.3.1,c.37.1.9 77428,77429 1b7tA 835 4.33e+01 1lvk b.34.3.1,c.37.1.9 24572,32169 1qviA 840 4.37e+01 b.34.3.1,c.37.1.9 96427,96428 1vgpA 373 4.47e+01 2zk7A 257 4.72e+01 2dtxA 264 4.75e+01 2du3A 534 4.78e+01 2du5A 534 5.13e+01 1fjeB 175 5.21e+01 1fj7A d.58.7.1,d.58.7.1 39210,39211 3gn3A 182 5.24e+01 2zwsA 646 5.25e+01 1h1vG 331 5.25e+01 d.109.1.1,d.109.1.1,d.109.1.1 76503,76504,76505 2rg4A 216 5.26e+01 3hgfA 107 5.53e+01 1duvG 333 5.55e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1zmzA 98 5.56e+01 1na3A 91 5.65e+01 k.38.1.1 85481 2r0dA 347 5.86e+01 a.118.3.1,b.55.1.1 151496,151497 2issA 313 5.88e+01 1xdhA 331 5.93e+01 b.50.1.2 121870 2e66A 102 5.97e+01 2al7A 186 6.02e+01 c.37.1.8 126972 1lf2A 331 6.05e+01 b.50.1.2 77914 2i1yA 301 6.25e+01 3hluA 96 6.30e+01 1h8tA 292 6.45e+01 b.121.4.1 70920 2c8iA 289 6.47e+01 b.121.4.1 130103 3f1fF 210 6.56e+01 2j01F 210 6.62e+01 c.22.1.1 145567 1jg1A 235 6.63e+01 c.66.1.7 66661 1vsaD 205 6.64e+01 3finF 208 6.76e+01 3cf2A 806 6.78e+01 2hpaA 342 6.78e+01 1cviA c.60.1.2 33985 3c4uA 307 6.91e+01 2rhuA 329 6.92e+01 2igxA 329 7.00e+01 b.50.1.2 137404 2otcA 333 7.04e+01 1othA c.78.1.1,c.78.1.1 35234,35235 2fh1A 344 7.14e+01 d.109.1.1,d.109.1.1,d.109.1.1 133441,133442,133443 3f9qA 329 7.14e+01 1fnkA 127 7.21e+01 2chsA d.79.1.2 39777 1fnjA 127 7.21e+01 2chsA d.79.1.2 39776 3d2uA 281 7.26e+01 1xnwA 530 7.26e+01 c.14.1.4,c.14.1.4 115655,115656 1dmuA 299 7.36e+01 1dmuA c.52.1.4 33294 2avpA 70 7.40e+01 k.38.1.1 127382 1miqA 375 7.50e+01 b.50.1.2 79151 1nd6A 354 7.52e+01 c.60.1.2 80407 2vtbA 526 7.79e+01 2j4dA 525 7.88e+01