# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cghA 516 5.89e-49 a.118.8.6 156618 3gzsA 515 4.13e-47 3ejnA 474 6.08e-43 a.118.8.6 158180 3ehmA 532 2.28e-41 3fdhA 499 9.30e-37 3i4gA 528 1.67e-29 3kezA 461 2.40e-29 3jq0A 493 3.00e-28 3jq1A 481 1.90e-27 3ihvA 535 1.59e-26 3lewA 495 9.32e-25 3l22A 441 1.74e-24 3iv0A 481 6.97e-24 3hdxA 478 4.80e-23 3jysA 499 7.44e-23 3ckcA 527 7.97e-23 a.118.8.6 156736 2wqhA 125 1.36e-01 3gcb 470 2.71e-01 3gcb 3gcbA 470 2.71e-01 d.3.1.1 37032 1gcb 454 4.46e-01 3gcb 1djuA 388 6.24e-01 1bjwA c.67.1.1 59116 2e01A 457 6.61e-01 1gdeA 389 7.75e-01 c.67.1.1 60456 1na3A 91 7.93e-01 k.38.1.1 85481 2fuvA 549 2.35e+00 1ayx 492 2.73e+00 1ayx 2wiyA 394 3.76e+00 2fbaA 492 4.42e+00 a.102.1.1 133239 3cp2A 649 5.45e+00 2e7zA 727 5.79e+00 2f4qA 346 6.63e+00 1jpnA 296 6.76e+00 a.24.13.1,c.37.1.10 67039,67040 1ng1 294 7.32e+00 1ng1 1ls1A 295 7.37e+00 a.24.13.1,c.37.1.10 78170,78171 2rbdA 171 7.44e+00 2fepA 289 7.76e+00 1h2kA 349 7.92e+00 b.82.2.6 76572 2zblA 421 8.07e+00 1ei1A 391 8.48e+00 1aj6 d.14.1.3,d.122.1.2 37570,41104 1tml 286 8.54e+00 1tml 2e0cA 409 9.20e+00 2avpA 70 9.85e+00 k.38.1.1 127382 3kq4A 393 1.00e+01 2afaA 425 1.01e+01 a.102.1.3 126668 3kl4A 433 1.01e+01 3dmsA 427 1.07e+01 1qjwA 365 1.09e+01 1bvwA c.6.1.1 30657 3ipkA 497 1.12e+01 3hfxA 504 1.13e+01 3bujA 397 1.17e+01 1vrmA 325 1.20e+01 d.96.2.1 120472 1mzeA 351 1.23e+01 b.82.2.6 79694 1ezfA 340 1.32e+01 1ezfA a.128.1.2 19440 2j6vA 301 1.35e+01 1wm5A 208 1.38e+01 a.118.8.1 121028 1rwhA 757 1.43e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2b5dX 528 1.44e+01 a.8.3.3,c.6.2.4 127886,127887 2bpqA 373 1.50e+01 3c0qA 301 1.51e+01 1hh8A 213 1.53e+01 1e96B a.118.8.1 61042 1cb8A 678 1.57e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 3edtB 283 1.61e+01 3hurA 395 1.67e+01 1e96B 203 1.70e+01 1e96B a.118.8.1 19211 1eu1A 780 1.71e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 2b7oA 464 1.71e+01 c.1.10.8 128047 1h80A 464 1.76e+01 b.80.1.8 65714 1b5pA 385 1.99e+01 c.67.1.1 90403 1tu5A 746 1.99e+01 1bjwA 382 2.06e+01 1bjwA c.67.1.1 34349 1j3nA 408 2.12e+01 c.95.1.1,c.95.1.1 84074,84075 2bodX 286 2.13e+01 c.6.1.1 128909 1jnyA 435 2.23e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 3cesA 651 2.30e+01 2x6hA 696 2.35e+01 3icfA 335 2.38e+01 3d8cA 349 2.47e+01 3czgA 644 2.53e+01 3c96A 415 2.57e+01 c.3.1.2,d.16.1.2 156122,156123 1duvG 333 2.61e+01 1othA c.78.1.1,c.78.1.1 35228,35229 2bogX 286 2.61e+01 3c3yA 237 2.80e+01 2dtxA 264 2.86e+01 3l6dA 306 2.89e+01 3b46A 447 2.89e+01 2x5bA 761 2.91e+01 1pea 385 2.91e+01 1pea 1peaA 385 2.91e+01 c.93.1.1 35662 3khkA 544 2.98e+01 2cfuA 658 3.07e+01 d.106.1.3,d.157.1.13 146386,146387 1aru 344 3.08e+01 1arv 1arv 344 3.08e+01 1arv 2e4uA 555 3.11e+01 2zxcA 646 3.16e+01 1lfwA 470 3.18e+01 c.56.5.4,d.58.19.1 77942,77943 3gzdA 440 3.19e+01 1iab 200 3.19e+01 1iae 1iabA 200 3.19e+01 d.92.1.8 40312 3bcxA 437 3.22e+01 1t5oA 351 3.22e+01 c.124.1.5 106459 3g1uA 437 3.25e+01 2wyhA 923 3.26e+01 2hgsA 474 3.30e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1hqsA 423 3.33e+01 1iso c.77.1.1 61154 1iae 200 3.40e+01 1iae 3biqA 467 3.42e+01 3a11A 338 3.46e+01 2vh4A 381 3.48e+01 1bw0A 416 3.49e+01 1bw0A c.67.1.1 34385 1eluA 390 3.55e+01 1elqA c.67.1.3 34434 1ta8A 332 3.56e+01 d.142.2.2 112375 3lvtA 899 3.57e+01 1elqA 390 3.58e+01 1elqA c.67.1.3 34436 3a9zA 432 3.59e+01 1ncx 162 3.65e+01 1ncx 2h21A 440 3.68e+01 a.166.1.1,b.85.7.3 135976,135977 1jhfA 202 3.78e+01 a.4.5.2,b.87.1.1 63057,63058 2e3bA 344 3.80e+01 a.93.1.1 132024 1lycA 343 3.85e+01 a.93.1.1 74344 1kijA 390 3.93e+01 d.14.1.3,d.122.1.2 72514,72515 1topA 162 3.96e+01 a.39.1.5 17223 2a5yB 549 3.97e+01 a.4.5.80,a.77.1.3,c.37.1.20 144786,144787,144788 1rvgA 305 4.04e+01 c.1.10.2 97920 2cqsA 842 4.15e+01 2e9yA 316 4.23e+01 2zwsA 646 4.23e+01 1dysA 348 4.29e+01 1bvwA c.6.1.1 30669 1c0pA 363 4.33e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1jg1A 235 4.36e+01 c.66.1.7 66661 2zygA 480 4.39e+01 1p0yA 444 4.44e+01 a.166.1.1,b.85.7.3 87654,87655 1b78A 193 4.51e+01 1b78A c.51.4.1 33221 1b8xA 280 4.56e+01 1b8xA a.45.1.1,c.47.1.5 17739,33033 2o11A 407 4.58e+01 2axtB 510 4.58e+01 f.55.1.1 144927 2wwwA 349 4.59e+01 2x1yA 761 4.61e+01 2a2fX 325 4.61e+01 3l1lA 445 4.69e+01 1yqgA 263 4.69e+01 a.100.1.10,c.2.1.6 145920,145921 1h0hA 977 4.78e+01 b.52.2.2,c.81.1.1 76435,76436 1ivnA 190 4.83e+01 c.23.10.5 83719 1yxaA 398 4.90e+01 2pmvA 399 4.92e+01 1rlr 761 5.05e+01 1rlr 1rlrA 761 5.05e+01 a.98.1.1,c.7.1.2 18753,30679 1izoA 417 5.10e+01 a.104.1.1 83851 3hx6A 570 5.12e+01 2qmiA 447 5.12e+01 1mw7A 240 5.13e+01 e.39.1.1 79557 2pefA 373 5.14e+01 2rijA 387 5.25e+01 3czhA 481 5.46e+01 a.104.1.1 157149 1xrjA 261 5.47e+01 c.37.1.6 122256 1g73C 121 5.50e+01 1g3fA g.52.1.1 45375 1qazA 351 5.56e+01 1qazA a.102.3.1 18848 1kqfA 1015 5.56e+01 b.52.2.2,c.81.1.1 72871,72872 1nxcA 478 5.57e+01 a.102.2.1 92293 1g6q2 328 5.61e+01 1g6q2 3fpfA 298 5.62e+01 2c5kT 95 5.63e+01 3hmuA 472 5.67e+01 3hl5A 95 5.68e+01 2gn4A 344 5.75e+01 1vp4A 425 5.75e+01 c.67.1.1 113935 2psoA 237 5.78e+01 d.129.3.2 149824 3ffrA 362 5.92e+01 3euhC 234 5.99e+01 2ifaA 208 6.07e+01 d.90.1.1 137329 3bb8A 437 6.07e+01 1nc5A 373 6.18e+01 a.102.1.6 85548 1imvA 398 6.21e+01 e.1.1.1 62591 1h0cA 392 6.23e+01 c.67.1.3 83424 3iuuA 495 6.24e+01 1rj9A 304 6.29e+01 a.24.13.1,c.37.1.10 97553,97554 2x59A 761 6.34e+01 1a5cA 368 6.43e+01 1fbaA c.1.10.1 29148 1chuA 540 6.72e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1jmoA 480 6.75e+01 e.1.1.1 77138 2c7yA 404 6.76e+01 1konA 249 6.76e+01 e.39.1.1 72823 2i3hA 133 6.84e+01 g.52.1.1 137023 3ec7A 357 6.84e+01 1wovA 250 6.86e+01 a.132.1.1 121124 3l0qA 554 6.87e+01 1k7hA 476 7.09e+01 c.76.1.1 72101 2dlaA 222 7.20e+01 1jqoA 970 7.23e+01 c.1.12.3 77160 1uj2A 252 7.25e+01 c.37.1.6 99452 3kycB 660 7.27e+01 1tzfA 259 7.37e+01 c.68.1.13 107476 3jrtA 192 7.38e+01 2zo9B 274 7.50e+01 d.159.1.11 154714 1dbfA 127 7.51e+01 2chsA d.79.1.2 39761 2pjmA 226 7.56e+01 3ixqA 226 7.56e+01 1b77A 228 7.66e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1wq3A 322 7.79e+01 3gg4A 554 7.80e+01 1gt6A 269 7.81e+01 c.69.1.17 76342 3bjnA 165 7.83e+01 2cvxA 888 7.84e+01 2bmaA 470 7.89e+01 2pnkA 428 7.90e+01 c.1.9.8 149674 2zxiA 637 7.95e+01 3dzzA 391 7.97e+01