# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cghA 516 3.17e-54 a.118.8.6 156618 3gzsA 515 6.77e-52 3ejnA 474 9.18e-51 a.118.8.6 158180 3ehmA 532 9.47e-46 3fdhA 499 3.18e-40 3i4gA 528 1.63e-35 3jq1A 481 3.96e-34 3kezA 461 7.22e-34 3jq0A 493 4.18e-33 3ihvA 535 6.32e-33 3iv0A 481 1.63e-29 3l22A 441 2.23e-29 3lewA 495 2.86e-28 3hdxA 478 9.22e-28 3jysA 499 1.86e-26 3ckcA 527 2.66e-26 a.118.8.6 156736 2dtxA 264 1.08e+00 2dg5A 366 2.46e+00 d.153.1.6 131500 2qmqA 286 2.83e+00 3iam5 207 2.83e+00 2wqhA 125 3.72e+00 2ih8A 559 3.81e+00 b.6.1.3,b.6.1.3,b.6.1.3 137407,137408,137409 2zwsA 646 4.09e+00 1wkuA 254 4.47e+00 2qr4A 587 4.49e+00 2fug5 207 4.74e+00 3dkhA 559 4.81e+00 1jeyB 565 5.01e+00 1jeqB b.131.1.2,c.62.1.4 90372,90373 2zxcA 646 5.40e+00 2q9oA 559 5.41e+00 b.6.1.3,b.6.1.3,b.6.1.3 150149,150150,150151 1jeqB 565 5.69e+00 1jeqB b.131.1.2,c.62.1.4 90368,90369 1dbfA 127 5.89e+00 2chsA d.79.1.2 39761 1ng1 294 6.15e+00 1ng1 1jpnA 296 7.26e+00 a.24.13.1,c.37.1.10 67039,67040 1tc1A 220 9.15e+00 1tc1A c.61.1.1 34083 1qs2A 401 9.95e+00 1qs1A d.166.1.1,d.166.1.1 42268,42269 1xovA 326 1.19e+01 b.34.11.4,c.56.5.6 122206,122207 1jnyA 435 1.20e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1vjuA 309 1.24e+01 d.248.1.1 100835 2f1rA 171 1.28e+01 1ls1A 295 1.41e+01 a.24.13.1,c.37.1.10 78170,78171 1x91A 153 1.48e+01 a.29.6.1 114975 1wovA 250 1.73e+01 a.132.1.1 121124 2gifA 1057 1.76e+01 2zqqA 272 1.96e+01 1sjjA 863 2.00e+01 i.15.1.1 98894 2ixmA 303 2.03e+01 a.268.1.1 137776 3m6wA 464 2.13e+01 2jc9A 555 2.16e+01 1t9xA 1049 2.19e+01 1pf5A 131 2.35e+01 d.79.1.1 94604 3kvoA 346 2.37e+01 3by5A 155 2.39e+01 c.151.1.1 155721 2r0iA 327 2.57e+01 1gz6A 319 2.57e+01 c.2.1.2 76410 2j8sA 1055 2.58e+01 1b0nA 111 2.58e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1na3A 91 2.63e+01 k.38.1.1 85481 3bblA 287 2.65e+01 1f4pA 147 2.73e+01 5nul c.23.5.1 59651 3m5uA 361 2.73e+01 1i0lA 221 2.75e+01 c.61.1.1 71096 2v84A 343 2.86e+01 1urfA 81 2.87e+01 a.2.6.1 99827 2pthA 193 2.88e+01 c.56.3.1 33793 1b88A 114 2.92e+01 1tcrA b.1.1.1 20608 1kb5A 115 2.92e+01 1tvdA b.1.1.1 20611 1hzdA 272 2.98e+01 c.14.1.3 65969 1r85A 379 3.03e+01 c.1.8.3 104839 1nb9A 147 3.06e+01 b.43.5.1 85515 2pth 193 3.11e+01 2pth 2ywdA 191 3.15e+01 2bjuA 453 3.22e+01 b.50.1.2 128633 1xwiA 322 3.28e+01 2cu1A 103 3.57e+01 d.15.2.2 130802 2nptB 100 3.62e+01 d.15.2.2 138449 2rg4A 216 3.73e+01 3b46A 447 3.95e+01 1fadA 99 3.97e+01 1fadA a.77.1.2 18428 1c4zA 358 4.18e+01 1c4zA d.148.1.1 41766 1vk9A 151 4.26e+01 c.97.1.3 108640 1d0nA 729 4.27e+01 1d0nA d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1 40834,40835,40836,40837,40838,40839 2z98A 200 4.27e+01 c.23.5.3 154234 1seuA 592 4.48e+01 a.2.8.1,d.163.1.2,e.15.1.1 118952,118953,118954 1rvgA 305 4.55e+01 c.1.10.2 97920 1rrjA 565 4.59e+01 a.2.8.1,d.163.1.2,e.15.1.1 105078,105079,105080 1vpbA 451 4.70e+01 d.283.1.1 113950 1pfzA 380 4.77e+01 1smrA b.50.1.2 26881 1ge9A 184 4.79e+01 1dd5A d.67.3.1 60463 2fal 147 4.88e+01 2fal 1tikA 213 5.01e+01 c.23.5.3 107003 3g06A 622 5.04e+01 1yozA 116 5.08e+01 a.253.1.1 123796 1k4tA 592 5.10e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 3fmgA 276 5.23e+01 1e96B 203 5.31e+01 1e96B a.118.8.1 19211 1om2A 95 5.39e+01 1om2A a.23.4.1 16520 1hy3A 294 5.48e+01 c.37.1.5 71090 1a41 234 5.54e+01 1a41 1a41A 234 5.55e+01 d.163.1.2 42174 2cwcA 303 5.64e+01 1iioA 84 5.69e+01 a.39.4.1 66150 3czgA 644 5.71e+01 1f1uA 323 5.81e+01 d.32.1.3,d.32.1.3 83200,83201 3a11A 338 5.86e+01 1g6sA 427 5.95e+01 1eps d.68.2.2 39584 3ephA 409 5.97e+01 1wt4A 73 6.12e+01 1wmwA 330 6.18e+01 2kd1A 118 6.21e+01 3gjwA 350 6.26e+01 2v1tA 73 6.28e+01 2yzvA 303 6.30e+01 1xnfA 275 6.33e+01 a.118.8.1 115580 1wmiB 67 6.34e+01 a.137.13.1 121046 1qtqA 553 6.40e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 2b5dX 528 6.48e+01 a.8.3.3,c.6.2.4 127886,127887 1q7bA 244 6.49e+01 c.2.1.2 96026 1hh8A 213 6.49e+01 1e96B a.118.8.1 61042 2gn4A 344 6.57e+01 1ne6A 283 6.60e+01 b.82.3.2,b.82.3.2 91831,91832 2jqqA 204 6.69e+01 1auk 489 6.70e+01 1auk 1aukA 489 6.70e+01 c.76.1.2 35030 2x2bA 78 6.74e+01 1gtrA 553 6.75e+01 1gtrA b.53.1.2,c.26.1.1 26939,31578 1oz2A 331 6.77e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1wz7A 111 6.92e+01 d.330.1.1 121480 1wm5A 208 6.99e+01 a.118.8.1 121028 1lf2A 331 7.05e+01 b.50.1.2 77914 3f9pC 467 7.13e+01 3e6uA 411 7.15e+01 2e4uA 555 7.18e+01 2dx6A 159 7.78e+01 1qfgA 725 7.80e+01 1by5A f.4.3.3 43803 1fiwA 290 7.83e+01 5ptp