# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cghA 516 3.37e-53 a.118.8.6 156618 3gzsA 515 1.56e-51 3ejnA 474 1.13e-46 a.118.8.6 158180 3ehmA 532 4.48e-45 3fdhA 499 5.05e-38 3i4gA 528 6.45e-33 3kezA 461 3.28e-32 3jq0A 493 7.50e-32 3jq1A 481 1.07e-31 3ihvA 535 1.49e-30 3iv0A 481 3.70e-28 3lewA 495 3.78e-27 3l22A 441 8.95e-27 3hdxA 478 1.09e-25 3ckcA 527 4.55e-25 a.118.8.6 156736 3jysA 499 9.03e-25 2wqhA 125 6.26e-02 1na3A 91 4.56e-01 k.38.1.1 85481 2wyhA 923 1.48e+00 1wovA 250 2.03e+00 a.132.1.1 121124 2axtB 510 2.44e+00 f.55.1.1 144927 3gcb 470 3.58e+00 3gcb 3gcbA 470 3.58e+00 d.3.1.1 37032 2e01A 457 3.75e+00 1gcb 454 4.04e+00 3gcb 2fbaA 492 4.19e+00 a.102.1.1 133239 1ayx 492 4.44e+00 1ayx 3edtB 283 4.91e+00 3khkA 544 6.30e+00 1duvG 333 7.07e+00 1othA c.78.1.1,c.78.1.1 35228,35229 2fuvA 549 7.26e+00 2x6hA 696 7.31e+00 1wm5A 208 7.58e+00 a.118.8.1 121028 2bpqA 373 8.03e+00 1e96B 203 8.12e+00 1e96B a.118.8.1 19211 3hfxA 504 8.31e+00 1hh8A 213 8.93e+00 1e96B a.118.8.1 61042 3hurA 395 8.97e+00 1ncx 162 8.99e+00 1ncx 1topA 162 8.99e+00 a.39.1.5 17223 2cfuA 658 9.13e+00 d.106.1.3,d.157.1.13 146386,146387 2vh4A 381 9.13e+00 1djuA 388 9.25e+00 1bjwA c.67.1.1 59116 2e0cA 409 9.30e+00 2dtxA 264 9.48e+00 3dmsA 427 1.00e+01 2pefA 373 1.25e+01 2a5yB 549 1.27e+01 a.4.5.80,a.77.1.3,c.37.1.20 144786,144787,144788 3kl4A 433 1.29e+01 3c96A 415 1.45e+01 c.3.1.2,d.16.1.2 156122,156123 3bz1B 510 1.46e+01 1jpnA 296 1.46e+01 a.24.13.1,c.37.1.10 67039,67040 2avpA 70 1.61e+01 k.38.1.1 127382 1nxcA 478 1.64e+01 a.102.2.1 92293 1dysA 348 1.64e+01 1bvwA c.6.1.1 30669 1ng1 294 1.66e+01 1ng1 3ipkA 497 1.68e+01 1jhfA 202 1.75e+01 a.4.5.2,b.87.1.1 63057,63058 2i3oA 516 1.80e+01 d.153.1.6 137027 3fyfA 176 1.82e+01 1wkuA 254 1.86e+01 1q41A 424 1.87e+01 d.144.1.7 95774 1k7hA 476 1.92e+01 c.76.1.1 72101 1pea 385 1.93e+01 1pea 1peaA 385 1.93e+01 c.93.1.1 35662 2f4qA 346 2.06e+01 1cb8A 678 2.06e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1ls1A 295 2.07e+01 a.24.13.1,c.37.1.10 78170,78171 3d8cA 349 2.12e+01 1wteA 272 2.12e+01 c.52.1.29 114876 3dmeA 369 2.14e+01 1qjwA 365 2.16e+01 1bvwA c.6.1.1 30657 1jnyA 435 2.33e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 3lvtA 899 2.33e+01 2zxcA 646 2.34e+01 1dbfA 127 2.36e+01 2chsA d.79.1.2 39761 1a5cA 368 2.37e+01 1fbaA c.1.10.1 29148 2e4uA 555 2.39e+01 3bujA 397 2.39e+01 1izoA 417 2.43e+01 a.104.1.1 83851 2j6vA 301 2.44e+01 1gzsB 165 2.45e+01 a.168.1.1 76425 1vrmA 325 2.58e+01 d.96.2.1 120472 1h80A 464 2.60e+01 b.80.1.8 65714 1pb1A 416 2.68e+01 c.77.1.1 88014 2zwsA 646 2.73e+01 2rbdA 171 2.93e+01 1auk 489 2.93e+01 1auk 1aukA 489 2.93e+01 c.76.1.2 35030 2b7oA 464 3.01e+01 c.1.10.8 128047 1gdeA 389 3.12e+01 c.67.1.1 60456 3e1sA 574 3.12e+01 2b5dX 528 3.12e+01 a.8.3.3,c.6.2.4 127886,127887 1sjjA 863 3.20e+01 i.15.1.1 98894 2zygA 480 3.24e+01 2pidA 356 3.28e+01 3c0qA 301 3.35e+01 3m6wA 464 3.37e+01 1mzeA 351 3.39e+01 b.82.2.6 79694 1tml 286 3.40e+01 1tml 1ei1A 391 3.40e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 1t5oA 351 3.46e+01 c.124.1.5 106459 3cp2A 649 3.47e+01 1rwhA 757 3.48e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 3czgA 644 3.49e+01 2wiyA 394 3.53e+01 3b46A 447 3.54e+01 2zblA 421 3.55e+01 3gzdA 440 3.55e+01 2e9yA 316 3.57e+01 1gtrA 553 3.57e+01 1gtrA b.53.1.2,c.26.1.1 26939,31578 3a9zA 432 3.61e+01 1zthA 258 3.62e+01 1yxaA 398 3.70e+01 2du3A 534 3.74e+01 2e3bA 344 3.77e+01 a.93.1.1 132024 3czhA 481 3.78e+01 a.104.1.1 157149 1aru 344 3.82e+01 1arv 1b5pA 385 3.90e+01 c.67.1.1 90403 2zxiA 637 3.98e+01 2afaA 425 4.15e+01 a.102.1.3 126668 1arv 344 4.19e+01 1arv 1qtqA 553 4.29e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 2hgsA 474 4.39e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1h2kA 349 4.42e+01 b.82.2.6 76572 1lfwA 470 4.42e+01 c.56.5.4,d.58.19.1 77942,77943 2c7yA 404 4.45e+01 1rvgA 305 4.51e+01 c.1.10.2 97920 1a2xA 159 4.56e+01 1ncx a.39.1.5 17251 1eu1A 780 4.60e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 2zs0B 142 4.71e+01 2d2mB 142 4.75e+01 1f9xA 120 4.78e+01 1g3fA g.52.1.1 59748 1om2A 95 4.79e+01 1om2A a.23.4.1 16520 2fymA 431 4.80e+01 c.1.11.1,d.54.1.1 134379,134380 2cqsA 842 4.83e+01 2zfoB 142 4.99e+01 1j3nA 408 5.40e+01 c.95.1.1,c.95.1.1 84074,84075 1g3fA 117 5.41e+01 1g3fA g.52.1.1 45378 2ef5A 290 5.41e+01 2w8nA 487 5.51e+01 2dg5A 366 5.82e+01 d.153.1.6 131500 3c6gA 479 5.83e+01 a.104.1.1 155975 2pmvA 399 5.88e+01 1rztA 331 5.93e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2fepA 289 5.94e+01 2kpqA 100 5.98e+01 1wdkC 390 6.07e+01 c.95.1.1,c.95.1.1 109258,109259 3kycB 660 6.08e+01 1c4oA 664 6.12e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 2qyfB 240 6.22e+01 1wq3A 322 6.33e+01 2psoA 237 6.53e+01 d.129.3.2 149824 1b78A 193 6.58e+01 1b78A c.51.4.1 33221 1h0cA 392 6.59e+01 c.67.1.3 83424 2z3qA 119 6.63e+01 a.26.1.2 154002 3l6dA 306 6.66e+01 1pmi 440 6.74e+01 1pmi 1pmiA 440 6.74e+01 b.82.1.3 28114 3a11A 338 6.75e+01 1qfcA 306 6.76e+01 1uteA d.159.1.1 42077 2bcqA 335 6.84e+01 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 3gwjA 674 6.89e+01 3if2A 444 6.93e+01 1upkA 341 6.96e+01 a.118.1.15 99758 2pi6A 361 6.97e+01 c.1.8.5,d.26.3.1 149501,149502 2ifaA 208 6.98e+01 d.90.1.1 137329 3cvzA 273 7.04e+01 3kvoA 346 7.04e+01 2pftA 571 7.14e+01 1lycA 343 7.17e+01 a.93.1.1 74344 3ec7A 357 7.17e+01 3bmxA 642 7.20e+01 2h21A 440 7.20e+01 a.166.1.1,b.85.7.3 135976,135977 1o17A 345 7.21e+01 a.46.2.1,c.27.1.1 80765,80766 1hqsA 423 7.55e+01 1iso c.77.1.1 61154 2qytA 317 7.55e+01 2gn4A 344 7.58e+01 1dqwA 267 7.58e+01 1dqwA c.1.2.3 28551 3euhC 234 7.62e+01 2k3nA 160 7.63e+01 2e7zA 727 7.64e+01 1tu5A 746 7.78e+01 3llqA 256 7.81e+01 2brxA 244 7.82e+01 c.73.1.3 129028 3b2yA 275 7.83e+01 3c3yA 237 7.84e+01 1konA 249 7.84e+01 e.39.1.1 72823 3gn3A 182 7.91e+01 1p0yA 444 7.94e+01 a.166.1.1,b.85.7.3 87654,87655 2i1yA 301 7.97e+01 1tw6A 133 8.00e+01 g.52.1.1 112694 2i3hA 133 8.00e+01 g.52.1.1 137023