# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cghA 516 8.42e-54 a.118.8.6 156618 3gzsA 515 1.13e-51 3ejnA 474 4.01e-47 a.118.8.6 158180 3ehmA 532 9.81e-46 3fdhA 499 1.37e-39 3i4gA 528 1.39e-33 3kezA 461 3.46e-33 3jq0A 493 5.20e-32 3jq1A 481 5.18e-31 3ihvA 535 9.21e-30 3iv0A 481 1.72e-28 3l22A 441 4.94e-28 3lewA 495 1.10e-27 3jysA 499 1.04e-25 3hdxA 478 1.04e-25 3ckcA 527 1.17e-25 a.118.8.6 156736 2wqhA 125 4.24e-02 1na3A 91 1.92e-01 k.38.1.1 85481 2fbaA 492 9.05e-01 a.102.1.1 133239 1ayx 492 9.62e-01 1ayx 3b46A 447 1.58e+00 2rbdA 171 1.77e+00 1duvG 333 2.16e+00 1othA c.78.1.1,c.78.1.1 35228,35229 1djuA 388 2.41e+00 1bjwA c.67.1.1 59116 3dmsA 427 2.77e+00 2fuvA 549 2.82e+00 2bpqA 373 3.01e+00 2cfuA 658 3.23e+00 d.106.1.3,d.157.1.13 146386,146387 3kl4A 433 3.40e+00 3hurA 395 3.41e+00 2vh4A 381 3.57e+00 1jpnA 296 3.64e+00 a.24.13.1,c.37.1.10 67039,67040 1topA 162 4.00e+00 a.39.1.5 17223 2axtB 510 4.14e+00 f.55.1.1 144927 1ncx 162 4.15e+00 1ncx 1ng1 294 4.22e+00 1ng1 3dmeA 369 4.84e+00 3edtB 283 4.98e+00 1ls1A 295 5.23e+00 a.24.13.1,c.37.1.10 78170,78171 3hfxA 504 5.58e+00 2e0cA 409 5.83e+00 1h80A 464 6.25e+00 b.80.1.8 65714 2e9yA 316 6.33e+00 2x6hA 696 6.39e+00 1vrmA 325 6.42e+00 d.96.2.1 120472 2pefA 373 6.53e+00 1gcb 454 6.58e+00 3gcb 3gcb 470 6.95e+00 3gcb 3gcbA 470 6.95e+00 d.3.1.1 37032 3khkA 544 7.01e+00 1hh8A 213 7.04e+00 1e96B a.118.8.1 61042 1e96B 203 7.18e+00 1e96B a.118.8.1 19211 1lfwA 470 7.25e+00 c.56.5.4,d.58.19.1 77942,77943 1gdeA 389 7.43e+00 c.67.1.1 60456 1jhfA 202 7.60e+00 a.4.5.2,b.87.1.1 63057,63058 2i3oA 516 7.67e+00 d.153.1.6 137027 1pea 385 7.73e+00 1pea 1peaA 385 7.73e+00 c.93.1.1 35662 1wm5A 208 7.79e+00 a.118.8.1 121028 2zxcA 646 8.30e+00 2e01A 457 8.58e+00 2avpA 70 8.72e+00 k.38.1.1 127382 1tml 286 8.99e+00 1tml 1rwhA 757 9.63e+00 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1cb8A 678 9.70e+00 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2zwsA 646 9.76e+00 2pidA 356 1.02e+01 2j6vA 301 1.02e+01 1b5pA 385 1.05e+01 c.67.1.1 90403 2b7oA 464 1.11e+01 c.1.10.8 128047 3c0qA 301 1.13e+01 1pb1A 416 1.14e+01 c.77.1.1 88014 1gzsB 165 1.24e+01 a.168.1.1 76425 1j3nA 408 1.24e+01 c.95.1.1,c.95.1.1 84074,84075 2hgsA 474 1.24e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1ezfA 340 1.26e+01 1ezfA a.128.1.2 19440 1wovA 250 1.29e+01 a.132.1.1 121124 1eu1A 780 1.32e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 2dtxA 264 1.37e+01 2b5dX 528 1.37e+01 a.8.3.3,c.6.2.4 127886,127887 3m6wA 464 1.45e+01 1ei1A 391 1.46e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 1wdkC 390 1.47e+01 c.95.1.1,c.95.1.1 109258,109259 1o17A 345 1.47e+01 a.46.2.1,c.27.1.1 80765,80766 1izoA 417 1.48e+01 a.104.1.1 83851 2cqsA 842 1.49e+01 1jnyA 435 1.56e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2f4qA 346 1.65e+01 2wiyA 394 1.68e+01 3kq4A 393 1.75e+01 1aru 344 1.78e+01 1arv 3l6dA 306 1.80e+01 1k7hA 476 1.83e+01 c.76.1.1 72101 1c4oA 664 1.85e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1iab 200 1.85e+01 1iae 1iabA 200 1.85e+01 d.92.1.8 40312 3cp2A 649 1.91e+01 3c96A 415 1.91e+01 c.3.1.2,d.16.1.2 156122,156123 2e4uA 555 1.93e+01 2wyhA 923 1.93e+01 1rztA 331 1.99e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1p0yA 444 2.01e+01 a.166.1.1,b.85.7.3 87654,87655 2is6A 680 2.01e+01 1t5oA 351 2.10e+01 c.124.1.5 106459 3bz1B 510 2.11e+01 1arv 344 2.14e+01 1arv 2ez2A 456 2.14e+01 1clc 639 2.14e+01 1clc 1clcA 639 2.14e+01 a.102.1.2,b.1.18.2 18835,21872 3c3yA 237 2.25e+01 2b1mA 246 2.27e+01 2h21A 440 2.31e+01 a.166.1.1,b.85.7.3 135976,135977 2c7yA 404 2.34e+01 3ipkA 497 2.36e+01 2e3bA 344 2.43e+01 a.93.1.1 132024 1ufaA 520 2.46e+01 a.8.3.3,c.6.2.4 99329,99330 1wq3A 322 2.50e+01 1qjwA 365 2.52e+01 1bvwA c.6.1.1 30657 3hx6A 570 2.52e+01 3biqA 467 2.67e+01 1tu5A 746 2.67e+01 2wwwA 349 2.67e+01 1dysA 348 2.73e+01 1bvwA c.6.1.1 30669 2pmvA 399 2.74e+01 3bujA 397 2.75e+01 1eluA 390 2.82e+01 1elqA c.67.1.3 34434 2bcqA 335 2.83e+01 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 1elqA 390 2.85e+01 1elqA c.67.1.3 34436 1bjwA 382 2.86e+01 1bjwA c.67.1.1 34349 1jqoA 970 2.88e+01 c.1.12.3 77160 1mzeA 351 2.95e+01 b.82.2.6 79694 2zxiA 637 2.96e+01 3d8cA 349 3.00e+01 1dbfA 127 3.00e+01 2chsA d.79.1.2 39761 1om2A 95 3.01e+01 1om2A a.23.4.1 16520 2zygA 480 3.02e+01 1rj9A 304 3.08e+01 a.24.13.1,c.37.1.10 97553,97554 1m7vA 363 3.13e+01 d.174.1.1 78748 3bcxA 437 3.14e+01 3gzdA 440 3.17e+01 1tw6A 133 3.18e+01 g.52.1.1 112694 2i3hA 133 3.18e+01 g.52.1.1 137023 3hx0A 335 3.19e+01 2ph5A 480 3.21e+01 2du3A 534 3.23e+01 2ar0A 541 3.24e+01 c.66.1.45 127185 2f5uA 447 3.28e+01 1h2kA 349 3.30e+01 b.82.2.6 76572 1q41A 424 3.35e+01 d.144.1.7 95774 3a11A 338 3.36e+01 1lycA 343 3.37e+01 a.93.1.1 74344 2qmiA 447 3.38e+01 1h0cA 392 3.39e+01 c.67.1.3 83424 1g6sA 427 3.40e+01 1eps d.68.2.2 39584 1gtrA 553 3.41e+01 1gtrA b.53.1.2,c.26.1.1 26939,31578 1g6q2 328 3.47e+01 1g6q2 2zo9B 274 3.54e+01 d.159.1.11 154714 2cvxA 888 3.55e+01 2o11A 407 3.56e+01 1iae 200 3.63e+01 1iae 1flcB 175 3.64e+01 1flcB h.3.1.1 45716 2x1yA 761 3.65e+01 2pftA 571 3.70e+01 2x5bA 761 3.71e+01 3pmgA 561 3.75e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 3fjzA 427 3.76e+01 1a2xA 159 3.79e+01 1ncx a.39.1.5 17251 1ivnA 190 3.83e+01 c.23.10.5 83719 2o2kA 355 3.85e+01 2bogX 286 3.85e+01 1eps 427 3.87e+01 1eps 2f20A 240 3.88e+01 d.303.1.1 132791 2pnkA 428 3.97e+01 c.1.9.8 149674 1wzdA 215 3.99e+01 a.132.1.1 121493 3liiA 540 4.05e+01 3a9zA 432 4.07e+01 2afaA 425 4.08e+01 a.102.1.3 126668 2z3qA 119 4.16e+01 a.26.1.2 154002 3bmxA 642 4.23e+01 2a5yB 549 4.23e+01 a.4.5.80,a.77.1.3,c.37.1.20 144786,144787,144788 2e7zA 727 4.25e+01 2x41A 721 4.26e+01 3lvtA 899 4.27e+01 2dxnA 274 4.33e+01 d.159.1.11 146605 3ch3X 265 4.40e+01 1yxaA 398 4.41e+01 2gupA 292 4.45e+01 c.55.1.10,c.55.1.10 135744,135745 3dhyA 495 4.49e+01 2fepA 289 4.54e+01 1mi4A 427 4.56e+01 d.68.2.2 79141 2qhfA 407 4.60e+01 1yqgA 263 4.61e+01 a.100.1.10,c.2.1.6 145920,145921 1t3tA 1303 4.61e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1qazA 351 4.63e+01 1qazA a.102.3.1 18848 3icfA 335 4.65e+01 2h5gA 463 4.68e+01 3k8tA 888 4.68e+01 3llqA 256 4.74e+01 3d6nB 291 4.74e+01 2w9mA 578 4.75e+01 1bw0A 416 4.96e+01 1bw0A c.67.1.1 34385 1b78A 193 4.96e+01 1b78A c.51.4.1 33221 3euhC 234 4.98e+01 2vq7A 461 4.99e+01 1gt6A 269 5.01e+01 c.69.1.17 76342 1fwxA 595 5.07e+01 b.6.1.4,b.69.3.1 60069,60070 2hldG 278 5.07e+01 2fyfA 398 5.07e+01 1qtqA 553 5.08e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1kf6D 119 5.09e+01 f.21.2.2 72400 2yvtA 260 5.10e+01 d.159.1.6 153779 2qytA 317 5.14e+01 2q16A 219 5.15e+01 3cesA 651 5.16e+01 2avwA 311 5.19e+01 1vp4A 425 5.21e+01 c.67.1.1 113935 1nxcA 478 5.22e+01 a.102.2.1 92293 2x59A 761 5.25e+01 1jm6A 407 5.25e+01 a.29.5.1,d.122.1.4 66876,66877 2oegA 505 5.25e+01 2qeeA 437 5.32e+01 2ixsA 323 5.34e+01 1wteA 272 5.35e+01 c.52.1.29 114876 1lea 84 5.35e+01 1lea 2k3oA 129 5.45e+01 2fymA 431 5.52e+01 c.1.11.1,d.54.1.1 134379,134380 3e1sA 574 5.52e+01 2a2fX 325 5.55e+01 2zblA 421 5.58e+01 3hl5A 95 5.58e+01 2yxnA 322 5.58e+01 2kpqA 100 5.65e+01 2ph7A 246 5.66e+01 2x42A 721 5.68e+01 2dlaA 222 5.72e+01 1k7yA 577 5.74e+01 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 2f82A 450 5.75e+01 3kycB 660 5.78e+01 1f3lA 321 5.79e+01 1g6q2 c.66.1.6 59630 3d8kA 377 5.83e+01 2e87A 357 5.84e+01 1r9lA 309 5.95e+01 c.94.1.1 97262 1u4bA 580 6.04e+01 c.55.3.5,e.8.1.1 107664,107665 3fyfA 176 6.10e+01 2k3nA 160 6.11e+01 3kydB 551 6.13e+01 3ce6A 494 6.16e+01 3gjwA 350 6.22e+01 3g87A 394 6.30e+01 1c4zA 358 6.32e+01 1c4zA d.148.1.1 41766 1zunB 434 6.36e+01 b.43.3.1,b.44.1.1,c.37.1.8 125677,125678,125679 1byb 495 6.38e+01 1byb 2bodX 286 6.38e+01 c.6.1.1 128909 1f8yA 157 6.38e+01 1f8xA c.23.14.1 31395 1xo1A 291 6.40e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1rvgA 305 6.40e+01 c.1.10.2 97920 1avsA 90 6.42e+01 1cll a.39.1.5 17226 3ioqA 213 6.43e+01 1exnA 290 6.46e+01 1exnA a.60.7.1,c.120.1.2 18088,33358 3c8tA 451 6.52e+01 1tkkA 366 6.52e+01 c.1.11.2,d.54.1.1 107089,107090 1f8xA 157 6.53e+01 1f8xA c.23.14.1 31397 1ut8A 291 6.56e+01 a.60.7.1,c.120.1.2 99908,99909 2whqA 548 6.60e+01 2hhvA 580 6.64e+01 c.55.3.5,e.8.1.1 136514,136515 3ll7A 410 6.64e+01 1nk4A 580 6.65e+01 c.55.3.5,e.8.1.1 91923,91924 2ebfX 746 6.65e+01 a.296.1.1,c.150.1.2,d.3.1.17 146766,146767,146768 1c7gA 456 6.66e+01 c.67.1.2 90415 1jg1A 235 6.72e+01 c.66.1.7 66661 1tib 269 6.77e+01 3tgl 1tibA 269 6.77e+01 c.69.1.17 34738 2oaaA 249 6.78e+01 1ujwB 135 6.78e+01 h.4.9.1 99472 3hmuA 472 6.89e+01 3d03A 274 6.92e+01 d.159.1.11 157161 2q00A 129 6.92e+01 2c2xA 281 7.02e+01 1cm5A 759 7.05e+01 1cm5A c.7.1.1 30671 3gg4A 554 7.16e+01 1y8qB 640 7.18e+01 3a0oA 776 7.18e+01 2hd5A 359 7.24e+01 d.3.1.9 145293 1r45A 204 7.26e+01 d.166.1.1 111683 3a9bA 395 7.30e+01 1lk5A 229 7.31e+01 c.124.1.4,d.58.40.1 73960,73961 1l3sA 580 7.35e+01 c.55.3.5,e.8.1.1 84521,84522 3ffrA 362 7.41e+01 1qfcA 306 7.42e+01 1uteA d.159.1.1 42077 1hqsA 423 7.42e+01 1iso c.77.1.1 61154 1ds1A 324 7.46e+01 1drtA b.82.2.2 28127 1mzjA 339 7.46e+01 c.95.1.2,c.95.1.2 79700,79701 1soxA 466 7.51e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 2gn4A 344 7.53e+01 3ec7A 357 7.55e+01 1g73C 121 7.58e+01 1g3fA g.52.1.1 45375 1ta8A 332 7.60e+01 d.142.2.2 112375 3gdlA 267 7.61e+01 1b8xA 280 7.68e+01 1b8xA a.45.1.1,c.47.1.5 17739,33033 1rlr 761 7.80e+01 1rlr 1rlrA 761 7.80e+01 a.98.1.1,c.7.1.2 18753,30679 1kb9C 385 7.84e+01 f.32.1.1,f.21.1.2 77315,77316 2i1yA 301 7.88e+01 1nc5A 373 7.88e+01 a.102.1.6 85548 3iuuA 495 7.90e+01 3b2yA 275 7.93e+01 1hk8A 605 7.97e+01 c.7.1.3 83540