# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cghA 516 3.67e-52 a.118.8.6 156618 3gzsA 515 1.23e-50 3ejnA 474 4.53e-50 a.118.8.6 158180 3ehmA 532 1.14e-44 3fdhA 499 1.22e-38 3i4gA 528 8.49e-36 3jq1A 481 1.25e-35 3kezA 461 3.71e-34 3jq0A 493 5.96e-34 3ihvA 535 7.00e-33 3l22A 441 1.19e-31 3iv0A 481 3.68e-30 3jysA 499 1.11e-28 3hdxA 478 2.12e-28 3lewA 495 4.47e-28 3ckcA 527 1.55e-26 a.118.8.6 156736 1hh8A 213 1.30e-01 1e96B a.118.8.1 61042 1wm5A 208 2.75e-01 a.118.8.1 121028 1e96B 203 3.05e-01 1e96B a.118.8.1 19211 2zygA 480 6.33e-01 2qmqA 286 1.47e+00 2dtxA 264 1.69e+00 1xnfA 275 2.03e+00 a.118.8.1 115580 3fwnA 480 2.03e+00 1dn1A 594 2.16e+00 1dn1A e.25.1.1 43357 2zydA 480 2.47e+00 3iam5 207 4.62e+00 2fug5 207 4.63e+00 2ixmA 303 4.80e+00 a.268.1.1 137776 3jrtA 192 5.27e+00 3fyfA 176 5.85e+00 2yzvA 303 5.97e+00 2cwcA 303 6.19e+00 1wkuA 254 6.48e+00 2wqhA 125 7.53e+00 1jpnA 296 8.92e+00 a.24.13.1,c.37.1.10 67039,67040 3lg6A 235 9.11e+00 3lrbA 445 9.22e+00 3lk41 286 1.04e+01 2zxcA 646 1.06e+01 1rvgA 305 1.09e+01 c.1.10.2 97920 3b46A 447 1.14e+01 1qs2A 401 1.16e+01 1qs1A d.166.1.1,d.166.1.1 42268,42269 2zwsA 646 1.29e+01 1vjuA 309 1.35e+01 d.248.1.1 100835 2hdoA 209 1.41e+01 c.108.1.6 136345 3bblA 287 1.48e+01 2qxxA 190 1.61e+01 2v6kA 214 1.70e+01 1gz6A 319 1.92e+01 c.2.1.2 76410 1x91A 153 2.00e+01 a.29.6.1 114975 1iznA 286 2.04e+01 e.43.1.1 83847 1dbfA 127 2.18e+01 2chsA d.79.1.2 39761 1i0lA 221 2.23e+01 c.61.1.1 71096 3ioyA 319 2.26e+01 3hk0A 256 2.46e+01 3l1lA 445 2.49e+01 1jj2A 239 2.68e+01 1rl2A b.34.5.3,b.40.4.5 63084,63085 1gr0A 367 2.69e+01 c.2.1.3,d.81.1.3 70379,70380 2hv6A 323 2.89e+01 a.268.1.1 136784 2g62A 325 3.11e+01 a.268.1.1 134685 2bjuA 453 3.33e+01 b.50.1.2 128633 1tc1A 220 3.38e+01 1tc1A c.61.1.1 34083 2r76A 152 3.56e+01 1ls1A 295 3.56e+01 a.24.13.1,c.37.1.10 78170,78171 2pth 193 3.84e+01 2pth 2pthA 193 3.84e+01 c.56.3.1 33793 1f1uA 323 3.89e+01 d.32.1.3,d.32.1.3 83200,83201 3b9oA 440 3.94e+01 1lfdA 87 3.96e+01 1lfdA d.15.1.5 37622 3fmsA 209 3.97e+01 3c8tA 451 3.99e+01 1rom 403 4.05e+01 1rom 3h5mA 445 4.05e+01 2v84A 343 4.23e+01 1xwiA 322 4.25e+01 1szwA 379 4.27e+01 d.265.1.4 99047 1xiuA 230 4.32e+01 3fnrA 464 4.36e+01 2gpyA 233 4.39e+01 2e4uA 555 4.41e+01 1s2wA 295 4.52e+01 c.1.12.7 98407 1aua 296 4.54e+01 1aua 1auaA 296 4.54e+01 a.5.3.1,c.13.1.1 16290,30882 2zfdA 226 4.54e+01 a.39.1.5 154406 1g6q2 328 4.77e+01 1g6q2 1to3A 304 4.91e+01 c.1.10.1 107161 3edtB 283 5.04e+01 1zynA 202 5.07e+01 c.47.1.2,c.47.1.2 125838,125839 2pftA 571 5.10e+01 1f9xA 120 5.12e+01 1g3fA g.52.1.1 59748 1hyuA 521 5.17e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2ywdA 191 5.17e+01 1izlC 473 5.24e+01 i.5.1.1 76996 1dceB 331 5.48e+01 1dceB a.102.4.3 18872 2gifA 1057 5.49e+01 1zclA 180 5.51e+01 1ng1 294 5.59e+01 1ng1 3m8nA 225 5.65e+01 3ephA 409 5.75e+01 1dkfA 233 5.78e+01 3erdA a.123.1.1 19280 1n2aA 201 5.90e+01 a.45.1.1,c.47.1.5 91553,91554 2cqsA 842 6.06e+01 1vqoA 240 6.09e+01 b.34.5.3,b.40.4.5 120361,120362 3ec7A 357 6.15e+01 1lxdA 100 6.25e+01 1lfdA d.15.1.5 37624 1t9xA 1049 6.26e+01 3dkhA 559 6.31e+01 2j8sA 1055 6.36e+01 1uu1A 335 6.47e+01 c.67.1.1 99993 1c4zA 358 6.59e+01 1c4zA d.148.1.1 41766 1cb8A 678 6.71e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2ifaA 208 6.84e+01 d.90.1.1 137329 2iswA 323 7.03e+01 3a1yG 284 7.04e+01 2cu1A 103 7.12e+01 d.15.2.2 130802 3hl5A 95 7.16e+01 2lefA 86 7.18e+01 2lefA a.21.1.1 16433 2jc9A 555 7.20e+01 3hurA 395 7.22e+01 1a0fA 201 7.34e+01 1a0fA a.45.1.1,c.47.1.5 17737,33031 1f1xA 322 7.35e+01 d.32.1.3,d.32.1.3 83208,83209 1zbqA 327 7.49e+01 c.2.1.2 124862 1bmlC 362 7.52e+01 1bmlC d.15.5.1,d.15.5.1,d.15.5.1 37729,37730,37731 3idfA 138 7.54e+01 1dp4A 435 7.68e+01 1dp4A c.93.1.1 35710 2q9oA 559 7.68e+01 b.6.1.3,b.6.1.3,b.6.1.3 150149,150150,150151 1q7bA 244 7.69e+01 c.2.1.2 96026 1qhdA 398 7.79e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1rl3A 288 7.84e+01 b.82.3.2,b.82.3.2 104975,104976