# List of top-scoring protein chains for T0532.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3i4gA 528 1.10e-57 3ihvA 535 7.94e-55 3kezA 461 6.84e-54 3jq1A 481 3.77e-52 3jysA 499 1.95e-51 3cghA 516 2.21e-51 a.118.8.6 156618 3gzsA 515 5.44e-51 3ckcA 527 3.18e-45 a.118.8.6 156736 3ejnA 474 1.07e-44 a.118.8.6 158180 3hdxA 478 1.25e-43 3l22A 441 4.98e-43 3ehmA 532 3.82e-42 3jq0A 493 9.15e-41 3lewA 495 1.67e-40 3iv0A 481 1.29e-38 3fdhA 499 2.05e-35 2wyhA 923 3.25e-01 1dc1A 323 4.74e-01 1dc1A c.52.1.11 33321 3cf4A 807 9.11e-01 2fuvA 549 1.41e+00 2qr4A 587 2.04e+00 1hh8A 213 3.20e+00 1e96B a.118.8.1 61042 1e96B 203 3.22e+00 1e96B a.118.8.1 19211 1wm5A 208 3.26e+00 a.118.8.1 121028 2g37A 327 3.76e+00 2ekgA 327 4.00e+00 2wqhA 125 4.86e+00 1djuA 388 7.01e+00 1bjwA c.67.1.1 59116 1b47A 304 7.57e+00 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 2cblA 305 7.67e+00 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 3i16A 427 8.37e+00 1gdeA 389 9.37e+00 c.67.1.1 60456 1vsaD 205 1.08e+01 2j01F 210 1.13e+01 c.22.1.1 145567 3f1fF 210 1.17e+01 1y8gA 327 1.19e+01 3lvtA 899 1.20e+01 1zmuA 327 1.23e+01 3finF 208 1.23e+01 3hurA 395 1.24e+01 2r0iA 327 1.26e+01 1lqaA 346 1.28e+01 c.1.7.1 84674 1w3bA 388 1.38e+01 a.118.8.1 109149 3buxB 329 1.42e+01 a.39.1.7,a.48.1.1,d.93.1.1 155647,155648,155649 3k59A 786 1.51e+01 1q8iA 783 1.57e+01 c.55.3.5,e.8.1.1 96208,96209 2im5A 394 1.88e+01 1b5pA 385 1.94e+01 c.67.1.1 90403 1ia5A 339 1.97e+01 b.80.1.3 62111 3ghgC 411 2.03e+01 1tkkA 366 2.12e+01 c.1.11.2,d.54.1.1 107089,107090 1b5oA 385 2.13e+01 c.67.1.1 90401 2w36A 225 2.17e+01 2w35A 225 2.26e+01 3hd0A 237 2.34e+01 2j42A 721 2.43e+01 2ganA 190 2.57e+01 d.108.1.1 134889 1im9D 225 2.58e+01 1nkr b.1.1.4,b.1.1.4 62585,62586 2ra1A 412 2.61e+01 1gzsB 165 2.65e+01 a.168.1.1 76425 2va8A 715 2.67e+01 2c42A 1231 2.67e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 3c3pA 210 2.70e+01 2wzjA 327 2.81e+01 2pbnA 313 2.84e+01 3dzxA 346 3.06e+01 3iam5 207 3.13e+01 2h4vA 320 3.30e+01 3fpfA 298 3.45e+01 1lt8A 406 3.51e+01 c.1.26.1 78186 5bj4A 385 3.51e+01 c.67.1.1 100875 1vpbA 451 3.54e+01 d.283.1.1 113950 3iecA 319 3.55e+01 5bj3A 385 3.66e+01 c.67.1.1 100871 1bkgA 385 3.73e+01 1bjwA c.67.1.1 34351 3fqiA 417 3.77e+01 1bjwA 382 3.80e+01 1bjwA c.67.1.1 34349 2j7pA 294 3.86e+01 a.24.13.1,c.37.1.10 138119,138120 2j45A 297 3.87e+01 a.24.13.1,c.37.1.10 137983,137984 1gkuB 1054 3.87e+01 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 2z5lA 511 3.87e+01 1ls1A 295 3.88e+01 a.24.13.1,c.37.1.10 78170,78171 1jpnA 296 3.92e+01 a.24.13.1,c.37.1.10 67039,67040 1ur9A 499 4.01e+01 b.72.2.1,c.1.8.5,d.26.3.1 99819,99820,99821 1ogbA 499 4.03e+01 b.72.2.1,c.1.8.5,d.26.3.1 92882,92883,92884 1zmvA 327 4.16e+01 1f1sA 814 4.16e+01 a.102.3.2,b.1.18.2,b.24.1.1,b.30.5.2 64928,64929,64930,64931 3fphA 298 4.23e+01 1ynpA 317 4.32e+01 1fbvA 388 4.35e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1,g.44.1.1 17384,17778,40532,45321 1xrsA 516 4.55e+01 c.1.19.4 115883 1upkA 341 4.59e+01 a.118.1.15 99758 1fsuA 492 4.67e+01 c.76.1.2 35032 1v5fA 589 4.70e+01 c.31.1.3,c.36.1.5,c.36.1.9 119847,119848,119849 3iegA 359 4.77e+01 2djiA 590 4.83e+01 c.31.1.3,c.36.1.5,c.36.1.9 131544,131545,131546 1e6zA 498 4.88e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59330,59331,59332 1o6iA 499 4.91e+01 b.72.2.1,c.1.8.5,d.26.3.1 86630,86631,86632 1h0iA 499 4.98e+01 b.72.2.1,c.1.8.5,d.26.3.1 70838,70839,70840 2uy1B 493 5.07e+01 1goiA 499 5.15e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1na0A 125 5.15e+01 k.38.1.1 85479 1qb0A 211 5.19e+01 1c25 c.46.1.1 32699 3htkC 267 5.39e+01 2eb4A 267 5.40e+01 3bz1B 510 5.44e+01 2d54A 502 5.49e+01 a.27.1.1,c.26.1.1 131264,131265 3cjfA 309 5.50e+01 1e6pA 499 5.55e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 2c03A 297 5.61e+01 a.24.13.1,c.37.1.10 129566,129567 1kvtA 338 5.63e+01 c.2.1.2 29798 1ewrA 649 5.66e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1 19073,32387,33744 1ftrA 296 5.67e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1xcrA 316 5.72e+01 d.290.1.2 121860 1kvrA 338 5.73e+01 c.2.1.2 29793 1rj9B 300 5.77e+01 a.24.13.1,c.37.1.10 97555,97556 1kvqA 338 6.05e+01 c.2.1.2 29797 1b89A 449 6.06e+01 1b89A a.118.1.3 19138 1u3dA 509 6.22e+01 a.99.1.1,c.28.1.1 107638,107639 2x0jA 294 6.33e+01 2uy1A 493 6.34e+01 1kfwA 435 6.56e+01 c.1.8.5,d.26.3.1 77376,77377 3f0zA 292 6.80e+01 1u5eA 211 6.84e+01 b.55.1.1 119540 3ghgB 461 6.87e+01 2ng1A 293 7.02e+01 a.24.13.1,c.37.1.10 16962,32273 1ffhA 294 7.04e+01 a.24.13.1,c.37.1.10 16960,32271 3f10A 292 7.07e+01 1o7xA 377 7.14e+01 a.103.1.1 81171 3hyiA 295 7.18e+01 3i0xA 291 7.22e+01 3h32B 458 7.31e+01 3g1uA 437 7.33e+01 2fjkA 305 7.37e+01 3i0wA 290 7.38e+01 1ji6A 589 7.38e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2ifuA 307 7.39e+01 2pozA 392 7.44e+01 3g3eA 351 7.56e+01 3cukA 347 7.80e+01 3jz4A 481 7.85e+01