# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3i4gA 528 6.90e-34 3kezA 461 1.13e-32 3ihvA 535 2.36e-32 3cghA 516 3.84e-32 a.118.8.6 156618 3jysA 499 3.47e-31 3jq1A 481 3.47e-30 3gzsA 515 1.15e-29 3ckcA 527 1.01e-28 a.118.8.6 156736 3hdxA 478 1.53e-27 3lewA 495 2.19e-27 3ejnA 474 5.12e-27 a.118.8.6 158180 3ehmA 532 1.35e-26 3jq0A 493 5.48e-26 3iv0A 481 9.71e-26 3l22A 441 6.42e-25 3fdhA 499 6.54e-23 3kq4A 393 4.88e-02 1ji6A 589 5.68e-02 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1eu1A 780 1.09e-01 1dmr b.52.2.2,c.81.1.1 26903,35311 2pmvA 399 1.37e-01 3eb7A 589 4.66e-01 3i16A 427 4.70e-01 1dlcA 584 7.53e-01 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1hh8A 213 7.54e-01 1e96B a.118.8.1 61042 1wm5A 208 8.16e-01 a.118.8.1 121028 3khkA 544 1.09e+00 1n7oA 721 1.52e+00 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 3bz1B 510 2.47e+00 1eguA 731 2.55e+00 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2axtB 510 3.24e+00 f.55.1.1 144927 3l6dA 306 3.62e+00 1dmhA 311 4.37e+00 1dmhA b.3.6.1 22633 1ls1A 295 4.49e+00 a.24.13.1,c.37.1.10 78170,78171 2fuvA 549 4.51e+00 2pefA 373 5.11e+00 2wqhA 125 5.11e+00 3kl4A 433 5.60e+00 1djuA 388 5.73e+00 1bjwA c.67.1.1 59116 2z3yA 662 6.30e+00 a.4.1.18,c.3.1.2,d.16.1.5 154024,154025,154026 2c42A 1231 6.56e+00 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2wyhA 923 6.57e+00 3dhiA 500 6.58e+00 2e7zA 727 6.87e+00 3l1lA 445 7.12e+00 1gdeA 389 7.88e+00 c.67.1.1 60456 3hhsA 694 7.97e+00 3lvtA 899 8.02e+00 2vh4A 381 8.19e+00 1qyiA 384 8.28e+00 c.108.1.13 96595 1v9nA 360 8.61e+00 3ge3A 500 8.69e+00 3iukA 562 8.77e+00 2efkA 301 9.27e+00 a.238.1.4 146815 2g8lA 299 9.63e+00 e.50.1.1 134775 3a11A 338 9.99e+00 1na3A 91 1.04e+01 k.38.1.1 85481 1fmtA 314 1.10e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1i5pA 633 1.11e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1w36B 1180 1.14e+01 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2og4A 254 1.18e+01 3a9iA 376 1.30e+01 3g1uA 437 1.34e+01 1jqoA 970 1.35e+01 c.1.12.3 77160 1ciy 590 1.37e+01 1ciy 1ciyA 590 1.37e+01 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1qazA 351 1.37e+01 1qazA a.102.3.1 18848 1ru3A 732 1.38e+01 e.26.1.3 97835 3h3xQ 549 1.41e+01 3ed5A 238 1.41e+01 2nz8B 313 1.44e+01 a.87.1.1,b.55.1.1 138838,138839 3c0qA 301 1.46e+01 3ch3X 265 1.52e+01 3i76A 244 1.52e+01 1gcb 454 1.54e+01 3gcb 2r8qA 359 1.61e+01 2x1dA 357 1.62e+01 3hurA 395 1.65e+01 2incA 491 1.67e+01 a.25.1.2 137524 3f6fA 210 1.69e+01 3ftbA 361 1.69e+01 2e01A 457 1.75e+01 2x1cA 357 1.83e+01 2e87A 357 1.86e+01 1rztA 331 1.88e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2j6vA 301 1.91e+01 2vycA 755 2.00e+01 3gcb 470 2.02e+01 3gcb 3gcbA 470 2.02e+01 d.3.1.1 37032 1t0qA 498 2.03e+01 a.25.1.2 106220 2x0lA 734 2.05e+01 3hx0A 335 2.07e+01 3gwjA 674 2.07e+01 2x6hA 696 2.11e+01 2pnkA 428 2.12e+01 c.1.9.8 149674 1r9oA 477 2.17e+01 a.104.1.1 104878 2w9mA 578 2.18e+01 3dhvA 512 2.20e+01 3gwaA 365 2.25e+01 1xjjA 644 2.35e+01 1wa5C 960 2.37e+01 a.118.1.1 114433 1aipA 405 2.38e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 3ky9A 587 2.38e+01 1jnyA 435 2.46e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2iqhA 499 2.50e+01 e.75.1.1 147774 3c4hA 357 2.51e+01 2napA 723 2.52e+01 2napA b.52.2.2,c.81.1.1 26926,35334 3iieA 401 2.56e+01 3gjwA 350 2.58e+01 1yxaA 398 2.58e+01 1iapA 211 2.62e+01 a.91.1.1 62119 2is6A 680 2.62e+01 2h7jA 220 2.70e+01 d.3.1.1 136216 2qeeA 437 2.71e+01 3dfhA 394 2.71e+01 1y791 680 2.72e+01 3cf4A 807 2.74e+01 3fceA 512 2.74e+01 2frqA 225 2.81e+01 d.3.1.1 133999 2nysA 176 2.84e+01 b.136.1.2 148518 2g37A 327 2.85e+01 2ffjA 300 2.93e+01 e.50.1.1 133387 3clhA 343 3.11e+01 3iejA 222 3.15e+01 1khoA 370 3.18e+01 a.124.1.1,b.12.1.3 72489,72490 1a0dA 440 3.18e+01 1a0cA c.1.15.3 29533 2ekgA 327 3.23e+01 2im5A 394 3.26e+01 3gzdA 440 3.30e+01 3k7nA 397 3.39e+01 1jm6A 407 3.46e+01 a.29.5.1,d.122.1.4 66876,66877 3eqmA 503 3.49e+01 1nqcA 217 3.49e+01 d.3.1.1 86024 2kd1A 118 3.51e+01 2ebfX 746 3.52e+01 a.296.1.1,c.150.1.2,d.3.1.17 146766,146767,146768 2d5bA 500 3.52e+01 a.27.1.1,c.26.1.1 131268,131269 2ar0A 541 3.55e+01 c.66.1.45 127185 2ra1A 412 3.59e+01 1s3rA 535 3.60e+01 1ddzA 496 3.62e+01 1ddzA c.53.2.1,c.53.2.1 33372,33373 2yxlA 450 3.65e+01 2afdA 88 3.66e+01 2b1mA 246 3.69e+01 2wbfX 265 3.74e+01 3fpfA 298 3.79e+01 3bxzA 471 3.81e+01 1qtqA 553 3.81e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 2avpA 70 3.93e+01 k.38.1.1 127382 3gueA 484 3.97e+01 1foeA 377 4.00e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 3c7bB 366 4.06e+01 d.58.1.5,d.58.36.2,d.134.1.1 156004,156005,156006 2phcB 225 4.09e+01 b.62.1.4,d.74.5.1 149466,149467 3fdbA 377 4.24e+01 2wmkA 606 4.28e+01 3dc8A 490 4.37e+01 3ls8A 614 4.38e+01 2olvA 669 4.45e+01 d.2.1.10,e.3.1.1 148821,148822 2hgsA 474 4.47e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1gkuB 1054 4.48e+01 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 2v3vA 723 4.54e+01 b.52.2.2,c.81.1.1 152463,152464 1fh0A 221 4.60e+01 1cs8A d.3.1.1 59832 2vrwB 406 4.67e+01 3g79A 478 4.73e+01 2bcqA 335 4.79e+01 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 2okcA 445 4.87e+01 c.66.1.45 148801 3ipkA 497 4.90e+01 16vpA 366 4.97e+01 16vpA d.180.1.1 42601 1cb8A 678 4.98e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1h21A 247 5.02e+01 a.138.1.3 76510 1woyA 500 5.05e+01 a.27.1.1,c.26.1.1 121130,121131 1d5yA 292 5.06e+01 1d5yA a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 2zwsA 646 5.08e+01 2qmiA 447 5.13e+01 1ej6A 1289 5.14e+01 i.7.1.1 45967 4eugA 229 5.17e+01 3eugA c.18.1.1 31019 1sjdA 368 5.20e+01 c.1.11.2,d.54.1.1 105632,105633 1vajA 214 5.38e+01 d.309.1.1 119907 1qsaA 618 5.38e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1amuA 563 5.45e+01 1amuA e.23.1.1 43351 1l5jA 865 5.45e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 1oaoC 729 5.50e+01 e.26.1.3 86746 3krwA 688 5.52e+01 1yc9A 442 5.60e+01 1q16A 1247 5.64e+01 b.52.2.2,c.81.1.1 95546,95547 3bb0A 609 5.65e+01 3a9zA 432 5.71e+01 2q0zX 339 5.84e+01 a.289.1.1,b.1.18.22 149993,149994 3i04M 728 5.87e+01 2nn4A 72 5.89e+01 a.272.1.1 148291 3iuzA 340 5.90e+01 3hw5A 261 5.95e+01 3g6iA 204 6.00e+01 3kmlA 161 6.04e+01 1g87A 614 6.04e+01 a.102.1.2,b.2.2.2 83275,83276 1iwdA 215 6.10e+01 d.3.1.1 83756 3fp3A 537 6.11e+01 3gh0A 316 6.15e+01 1vrmA 325 6.17e+01 d.96.2.1 120472 2q01A 497 6.18e+01 1h0hA 977 6.28e+01 b.52.2.2,c.81.1.1 76435,76436 3egwA 1244 6.28e+01 2qjcA 262 6.31e+01 3cikA 689 6.37e+01 1jlvA 209 6.41e+01 a.45.1.1,c.47.1.5 71729,71730 2wmiA 606 6.46e+01 1duvG 333 6.51e+01 1othA c.78.1.1,c.78.1.1 35228,35229 2j66A 428 6.54e+01 1uurA 473 6.58e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 3einA 209 6.58e+01 3h6pC 96 6.59e+01 1riiA 265 6.67e+01 c.60.1.1 111807 1j8mF 297 6.68e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1a8h 500 6.79e+01 1a8h 1dbhA 354 6.84e+01 1awe a.87.1.1,b.55.1.1 18514,26967 2hivA 621 6.86e+01 2okjA 504 6.90e+01 3f75A 224 6.91e+01 1hcuA 503 6.99e+01 a.102.2.1 65796 2ixsA 323 6.99e+01 2wqpA 349 7.00e+01 3kdwA 221 7.01e+01 2bogX 286 7.01e+01 3ed7A 295 7.02e+01 3k7mX 431 7.04e+01 2bv9A 290 7.08e+01 c.1.8.3 129242 1isiA 265 7.09e+01 c.23.14.3 71394 1wyuA 438 7.09e+01 c.67.1.7 121452 1xfiA 367 7.13e+01 e.50.1.1 109584 3ebuA 313 7.20e+01 1m7vA 363 7.21e+01 d.174.1.1 78748 3gh2X 315 7.24e+01 3ihhA 307 7.27e+01 1t5oA 351 7.29e+01 c.124.1.5 106459 1z5zA 271 7.33e+01 c.37.1.19 124499 1konA 249 7.36e+01 e.39.1.1 72823 3hvyA 427 7.36e+01 1o17A 345 7.38e+01 a.46.2.1,c.27.1.1 80765,80766 1a0cA 438 7.39e+01 1a0cA c.1.15.3 29529 2q40A 367 7.40e+01 e.50.1.1 139814 1vfvA 366 7.56e+01 c.37.1.9 108592 2rh1A 500 7.59e+01 3ehiX 313 7.62e+01 1kqfA 1015 7.82e+01 b.52.2.2,c.81.1.1 72871,72872 3eawX 313 7.88e+01 1t9xA 1049 7.88e+01 2o4uX 334 7.90e+01 2qubA 615 7.92e+01 1ldjA 760 7.95e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 3frhA 253 7.99e+01