# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3i4gA 528 7.49e-46 3ihvA 535 1.36e-43 3kezA 461 5.28e-43 3jq1A 481 1.04e-42 3jysA 499 4.45e-41 3cghA 516 9.01e-40 a.118.8.6 156618 3gzsA 515 9.58e-39 3hdxA 478 9.25e-37 3ckcA 527 1.01e-36 a.118.8.6 156736 3ejnA 474 3.44e-36 a.118.8.6 158180 3jq0A 493 1.89e-34 3lewA 495 1.95e-34 3l22A 441 5.01e-34 3ehmA 532 6.37e-33 3iv0A 481 1.90e-32 3fdhA 499 6.35e-30 2fuvA 549 9.85e-02 2uy1A 493 1.41e-01 1djuA 388 2.84e-01 1bjwA c.67.1.1 59116 1dc1A 323 4.29e-01 1dc1A c.52.1.11 33321 2ekgA 327 5.41e-01 3iegA 359 5.47e-01 1gdeA 389 5.58e-01 c.67.1.1 60456 2g37A 327 6.35e-01 1vpbA 451 7.86e-01 d.283.1.1 113950 1hh8A 213 8.23e-01 1e96B a.118.8.1 61042 1eu1A 780 1.03e+00 1dmr b.52.2.2,c.81.1.1 26903,35311 1usgA 346 1.17e+00 c.93.1.1 99864 2qr4A 587 1.40e+00 1wm5A 208 1.46e+00 a.118.8.1 121028 2r0iA 327 2.02e+00 1tkkA 366 2.06e+00 c.1.11.2,d.54.1.1 107089,107090 3e6uA 411 2.71e+00 1ji6A 589 3.25e+00 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1ls1A 295 3.35e+00 a.24.13.1,c.37.1.10 78170,78171 1izoA 417 3.71e+00 a.104.1.1 83851 3a09A 490 3.96e+00 3fpfA 298 3.96e+00 3a5vA 397 4.01e+00 1ftrA 296 4.23e+00 1ftrA d.58.33.1,d.58.33.1 39485,39486 1y3nA 490 4.48e+00 c.94.1.1 122597 2ifuA 307 4.81e+00 2fug5 207 5.69e+00 2p2sA 336 5.97e+00 3iam5 207 6.02e+00 1fnnA 389 6.17e+00 1fnnA a.4.5.11,c.37.1.20 16129,32426 3kc2A 352 6.27e+00 3edtB 283 6.47e+00 2zxcA 646 7.15e+00 3dfhA 394 7.22e+00 2zwsA 646 7.40e+00 2im5A 394 7.55e+00 3e1sA 574 7.84e+00 2ah6A 208 7.85e+00 2v3gA 283 8.29e+00 c.1.8.3 152457 1vjoA 393 8.32e+00 c.67.1.3 100827 1xnfA 275 8.35e+00 a.118.8.1 115580 3gvxA 290 8.39e+00 2e2eA 177 8.47e+00 2e7zA 727 8.66e+00 1ltlA 279 9.19e+00 b.40.4.11 84701 2citA 282 9.59e+00 c.1.8.3 130499 2liv 344 9.78e+00 2liv 1qvbA 481 9.80e+00 1qvbA c.1.8.4 28983 1isiA 265 1.08e+01 c.23.14.3 71394 3a11A 338 1.11e+01 2nw0A 189 1.11e+01 2pnfA 248 1.13e+01 1upkA 341 1.16e+01 a.118.1.15 99758 3cprA 304 1.21e+01 1z15A 344 1.22e+01 2wb0X 356 1.24e+01 2wqhA 125 1.26e+01 2wazX 356 1.33e+01 1elrA 131 1.34e+01 1a17 a.118.8.1 19209 1xrsA 516 1.35e+01 c.1.19.4 115883 3g79A 478 1.36e+01 2b05A 246 1.37e+01 1g0oA 283 1.41e+01 1ybvA c.2.1.2 60181 1n4aA 252 1.42e+01 c.92.2.2 85317 1anv 356 1.44e+01 1anv 1e6pA 499 1.48e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 2a0uA 383 1.52e+01 c.124.1.5 146036 2ga8A 359 1.55e+01 3lvyA 207 1.56e+01 1adt 356 1.60e+01 1anv 1adtA 356 1.61e+01 a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1dboA 506 1.62e+01 1dbgA b.80.1.4 28034 1goiA 499 1.63e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1h49A 512 1.72e+01 c.1.8.4 83477 1ccwB 483 1.72e+01 1cb7B c.1.19.2 29646 2rjrA 537 1.76e+01 1oflA 481 1.77e+01 b.80.1.4 103934 1dbgA 506 1.78e+01 1dbgA b.80.1.4 28033 2bv9A 290 1.82e+01 c.1.8.3 129242 3isnD 427 1.82e+01 3eskA 129 1.84e+01 3bm3A 272 1.84e+01 3ewbX 293 1.93e+01 2z61A 370 1.98e+01 1vgyA 393 1.99e+01 c.56.5.4,d.58.19.1 100620,100621 2e0cA 409 2.01e+01 3hd0A 237 2.04e+01 1n2zA 245 2.05e+01 c.92.2.2 79865 2c1vA 338 2.17e+01 3c4hA 357 2.19e+01 1yaaA 412 2.20e+01 1ajsA c.67.1.1 34280 1tc1A 220 2.29e+01 1tc1A c.61.1.1 34083 1j31A 262 2.36e+01 d.160.1.2 90808 1p0iA 529 2.40e+01 c.69.1.1 93867 3e4bA 452 2.41e+01 1i0lA 221 2.44e+01 c.61.1.1 71096 3lm4A 339 2.59e+01 2ffjA 300 2.62e+01 e.50.1.1 133387 2amlA 373 2.66e+01 2v9kA 530 2.67e+01 1yvhA 329 2.68e+01 a.39.1.7,a.48.1.1,d.93.1.1 124096,124097,124098 1ddgA 374 2.70e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 2hqbA 296 2.71e+01 2depA 356 2.82e+01 2bcqA 335 2.83e+01 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 2qveA 526 2.84e+01 1o70A 324 2.92e+01 b.118.1.1,b.118.1.1 81115,81116 2o6yA 521 2.96e+01 2oaaA 249 2.97e+01 1zthA 258 3.03e+01 1fobA 334 3.06e+01 c.1.8.3 83255 2o0rA 411 3.06e+01 3m0zA 249 3.07e+01 1qi9A 556 3.10e+01 1qhbA a.111.1.2 19053 3dmyA 480 3.22e+01 1kfwA 435 3.22e+01 c.1.8.5,d.26.3.1 77376,77377 1k30A 368 3.35e+01 c.112.1.1 68067 1j1nA 492 3.36e+01 c.94.1.1 83978 1vjuA 309 3.36e+01 d.248.1.1 100835 1iuqA 367 3.43e+01 c.112.1.1 90703 1r85A 379 3.51e+01 c.1.8.3 104839 1wosA 364 3.53e+01 b.44.2.1,d.250.1.1 109468,109469 3fxhA 135 3.61e+01 3dmgA 381 3.62e+01 1xcrA 316 3.63e+01 d.290.1.2 121860 1w7lA 422 3.64e+01 c.67.1.1 109226 1gegA 256 3.65e+01 1ybvA c.2.1.2 29888 1rztA 331 3.65e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 3bb0A 609 3.68e+01 1oycA 400 3.79e+01 c.1.4.1 28603 2egzA 219 3.81e+01 3ilvA 634 3.82e+01 1oyc 400 3.85e+01 1oyc 1jeyB 565 3.86e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 3gqnA 772 3.86e+01 2w36A 225 3.94e+01 2ohyA 539 4.04e+01 2pbrA 195 4.11e+01 3d3mA 168 4.15e+01 3a9fA 92 4.15e+01 2g8lA 299 4.37e+01 e.50.1.1 134775 3ksyA 1049 4.37e+01 1rl3A 288 4.37e+01 b.82.3.2,b.82.3.2 104975,104976 1jwiB 125 4.45e+01 d.169.1.1 67384 3dfeA 111 4.46e+01 3guiA 164 4.46e+01 2wslA 529 4.49e+01 2e9lA 469 4.53e+01 3b46A 447 4.57e+01 3fvsA 422 4.58e+01 2c4mA 796 4.62e+01 1gqeA 365 4.62e+01 e.38.1.1 70351 3e70C 328 4.63e+01 1wvtA 172 4.67e+01 1n1bA 549 4.67e+01 a.102.4.1,a.128.1.3 79799,79800 2a3nA 355 4.68e+01 2vsyA 568 4.78e+01 2h4vA 320 4.87e+01 1gw5A 621 4.95e+01 a.118.1.10 70629 3kkgA 146 4.95e+01 2pmvA 399 4.99e+01 2qf7A 1165 5.05e+01 1gzsB 165 5.07e+01 a.168.1.1 76425 1r1hA 696 5.09e+01 d.92.1.4 104756 2i2xB 258 5.10e+01 2cblA 305 5.13e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1cb8A 678 5.18e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2ra1A 412 5.18e+01 2dohC 31 5.21e+01 2x7kA 166 5.22e+01 1b0nA 111 5.32e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 2nwbA 400 5.33e+01 2x5bA 761 5.38e+01 1yueA 427 5.47e+01 168lA 164 5.49e+01 1l92 d.2.1.3 36975 2op5A 117 5.49e+01 d.58.4.22 148954 2blfA 373 5.58e+01 3b4wA 495 5.60e+01 1xjjA 644 5.63e+01 3hx0A 335 5.64e+01 3gq8A 609 5.64e+01 1qsaA 618 5.70e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 2of3A 266 5.83e+01 1ux6A 350 5.93e+01 b.29.1.16,g.75.1.1 100145,100146 3gvgA 283 5.97e+01 3h4aA 158 6.00e+01 1ads 315 6.00e+01 1frb 180lA 164 6.02e+01 1l92 d.2.1.3 36867 2zzrA 397 6.05e+01 1vl8A 267 6.07e+01 c.2.1.2 108733 1ne6A 283 6.09e+01 b.82.3.2,b.82.3.2 91831,91832 3edyA 544 6.11e+01 2og4A 254 6.13e+01 1na3A 91 6.17e+01 k.38.1.1 85481 1eswA 500 6.17e+01 1cwyA c.1.8.1 59500 2pgfA 371 6.19e+01 1fmtA 314 6.19e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 2odpA 509 6.24e+01 3e3mA 355 6.25e+01 3hutA 358 6.26e+01 2f6kA 307 6.30e+01 c.1.9.15 133047 1gcoA 261 6.31e+01 1ybvA c.2.1.2 29884 3lw1A 253 6.36e+01 2jf7A 532 6.38e+01 2fmpA 335 6.41e+01 a.60.6.1,a.60.12.1,d.218.1.2 133786,133787,133788 2pkeA 251 6.43e+01 2ppwA 216 6.48e+01 1vmaA 306 6.49e+01 a.24.13.1,c.37.1.10 108887,108888 2vkhA 546 6.53e+01 c.68.1.22 153225 3go9A 492 6.57e+01 1bjwA 382 6.59e+01 1bjwA c.67.1.1 34349 1b5pA 385 6.62e+01 c.67.1.1 90403 1j8yF 297 6.64e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1j1dB 106 6.65e+01 h.1.25.1 83964 1jnyA 435 6.65e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 3kk1B 452 6.66e+01 169lA 164 6.67e+01 1l92 d.2.1.3 36963 1tqxA 227 6.71e+01 c.1.2.2 112614 1us0A 316 6.72e+01 c.1.7.1 99850 3kheA 191 6.73e+01 1g5aA 628 6.73e+01 b.71.1.1,c.1.8.1 65152,65153 1ll2A 333 6.74e+01 c.68.1.14 74005 2okcA 445 6.78e+01 c.66.1.45 148801 3bs7A 78 6.83e+01 2w9mA 578 6.87e+01 3ip0A 158 6.90e+01 1t5oA 351 6.97e+01 c.124.1.5 106459 3xis 387 6.98e+01 4xis 1nc5A 373 7.00e+01 a.102.1.6 85548 3b9oA 440 7.03e+01 2z98A 200 7.06e+01 c.23.5.3 154234 3g1wA 305 7.06e+01 2agtA 319 7.18e+01 1geeA 261 7.19e+01 c.2.1.2 90509 1rj9A 304 7.25e+01 a.24.13.1,c.37.1.10 97553,97554 1bpyA 335 7.27e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 2kmgA 142 7.29e+01 1t90A 486 7.30e+01 3ik4A 365 7.34e+01 1kqfA 1015 7.36e+01 b.52.2.2,c.81.1.1 72871,72872 1dbfA 127 7.38e+01 2chsA d.79.1.2 39761 3k9dA 464 7.41e+01 1nbwA 607 7.42e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 3buxB 329 7.43e+01 a.39.1.7,a.48.1.1,d.93.1.1 155647,155648,155649 1wz7A 111 7.45e+01 d.330.1.1 121480 1elqA 390 7.46e+01 1elqA c.67.1.3 34436 2x59A 761 7.51e+01 1n5dA 288 7.55e+01 c.2.1.2 80030 3f4dA 332 7.60e+01 1yozA 116 7.60e+01 a.253.1.1 123796 1xknA 355 7.61e+01 d.126.1.6 115414 1gt0D 80 7.64e+01 a.21.1.1 76337 1oacA 727 7.71e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1lt8A 406 7.73e+01 c.1.26.1 78186 2c4nA 250 7.79e+01 c.108.1.14 129837 1ufaA 520 7.87e+01 a.8.3.3,c.6.2.4 99329,99330 1ezvA 430 7.89e+01 1be3A d.185.1.1,d.185.1.1 59541,59542 1i5kC 30 7.92e+01 2b30A 301 7.93e+01 c.108.1.10 127759 2pbnA 313 7.94e+01 3fhdA 508 7.95e+01 2vycA 755 7.98e+01