# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3i4gA 528 6.19e-36 3kezA 461 4.10e-35 3ihvA 535 7.32e-35 3cghA 516 1.24e-34 a.118.8.6 156618 3gzsA 515 1.78e-33 3jq1A 481 2.52e-33 3jysA 499 4.30e-33 3ckcA 527 6.43e-30 a.118.8.6 156736 3ehmA 532 1.33e-29 3ejnA 474 2.85e-29 a.118.8.6 158180 3hdxA 478 2.99e-29 3lewA 495 3.52e-28 3jq0A 493 9.28e-28 3l22A 441 2.57e-26 3iv0A 481 3.78e-26 3fdhA 499 1.65e-23 1eu1A 780 1.21e-01 1dmr b.52.2.2,c.81.1.1 26903,35311 1ji6A 589 3.36e-01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2pmvA 399 4.11e-01 3kq4A 393 5.87e-01 2axtB 510 1.60e+00 f.55.1.1 144927 1n7oA 721 1.83e+00 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 3bz1B 510 1.97e+00 1eguA 731 1.98e+00 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1dlcA 584 2.04e+00 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 3iukA 562 2.14e+00 2x0lA 734 2.57e+00 2fuvA 549 2.64e+00 1hh8A 213 2.70e+00 1e96B a.118.8.1 61042 3i16A 427 2.73e+00 1ciy 590 3.12e+00 1ciy 1ciyA 590 3.12e+00 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1wm5A 208 3.19e+00 a.118.8.1 121028 2pefA 373 3.49e+00 1ru3A 732 3.79e+00 e.26.1.3 97835 1qazA 351 4.11e+00 1qazA a.102.3.1 18848 3lvtA 899 4.41e+00 2wyhA 923 4.48e+00 1cb8A 678 4.49e+00 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 2vh4A 381 5.10e+00 1v9nA 360 7.49e+00 3a11A 338 7.52e+00 3fpfA 298 7.60e+00 1ls1A 295 8.03e+00 a.24.13.1,c.37.1.10 78170,78171 3khkA 544 8.39e+00 1wa5C 960 8.71e+00 a.118.1.1 114433 1dmhA 311 8.97e+00 1dmhA b.3.6.1 22633 2im5A 394 8.99e+00 3l6dA 306 9.63e+00 2e01A 457 9.68e+00 1gcb 454 1.03e+01 3gcb 2e0aA 394 1.04e+01 3gwjA 674 1.08e+01 3gcb 470 1.12e+01 3gcb 3gcbA 470 1.12e+01 d.3.1.1 37032 2c42A 1231 1.12e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2uy1A 493 1.13e+01 1woyA 500 1.13e+01 a.27.1.1,c.26.1.1 121130,121131 1yxaA 398 1.20e+01 2x6hA 696 1.21e+01 2wqhA 125 1.21e+01 1nxcA 478 1.21e+01 a.102.2.1 92293 3hurA 395 1.21e+01 3ky9A 587 1.23e+01 1xjjA 644 1.25e+01 2q01A 497 1.29e+01 1qyiA 384 1.40e+01 c.108.1.13 96595 2x1dA 357 1.47e+01 3ipkA 497 1.48e+01 2e7zA 727 1.54e+01 2z3yA 662 1.60e+01 a.4.1.18,c.3.1.2,d.16.1.5 154024,154025,154026 3dhiA 500 1.61e+01 1upkA 341 1.61e+01 a.118.1.15 99758 3fceA 512 1.61e+01 3hhsA 694 1.71e+01 1isiA 265 1.77e+01 c.23.14.3 71394 3kl4A 433 1.82e+01 3bb0A 609 1.86e+01 3dhvA 512 1.87e+01 1eswA 500 1.87e+01 1cwyA c.1.8.1 59500 2ra1A 412 1.91e+01 2x1cA 357 1.95e+01 2qmiA 447 1.95e+01 1r85A 379 2.07e+01 c.1.8.3 104839 3iieA 401 2.09e+01 2r8qA 359 2.10e+01 3g1uA 437 2.13e+01 3ge3A 500 2.13e+01 2g8lA 299 2.14e+01 e.50.1.1 134775 2bcqA 335 2.16e+01 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 1olmA 403 2.18e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1na3A 91 2.19e+01 k.38.1.1 85481 1y8oA 419 2.22e+01 a.29.5.1,d.122.1.4 144603,144604 1vns 609 2.30e+01 1vns 1vnsA 609 2.30e+01 a.111.1.3 19061 3e1sA 574 2.34e+01 2qugA 394 2.37e+01 1oaoC 729 2.48e+01 e.26.1.3 86746 2vycA 755 2.59e+01 3f6fA 210 2.67e+01 3cf4A 807 2.75e+01 2hydA 578 2.78e+01 c.37.1.12,f.37.1.1 136875,136876 2q8gA 407 2.85e+01 1vjoA 393 2.85e+01 c.67.1.3 100827 2qyfB 240 2.93e+01 2inpA 494 2.94e+01 2ohyA 539 3.01e+01 3gzdA 440 3.03e+01 1konA 249 3.06e+01 e.39.1.1 72823 2w9mA 578 3.10e+01 1x6vA 630 3.10e+01 b.122.1.3,c.26.1.5,c.37.1.4 121755,121756,121757 3eb7A 589 3.11e+01 1gkuB 1054 3.12e+01 c.37.1.16,c.37.1.16,e.10.1.1 65257,65258,65259 3kmlA 161 3.17e+01 1j8mF 297 3.17e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1r9jA 673 3.21e+01 c.36.1.6,c.36.1.10,c.48.1.1 111722,111723,111724 1c4oA 664 3.24e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1jmoA 480 3.31e+01 e.1.1.1 77138 2d5bA 500 3.32e+01 a.27.1.1,c.26.1.1 131268,131269 3dfhA 394 3.32e+01 1qlpA 394 3.34e+01 1ovaA e.1.1.1 42628 1jm6A 407 3.35e+01 a.29.5.1,d.122.1.4 66876,66877 3gwaA 365 3.39e+01 1rwhA 757 3.48e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 2phcB 225 3.65e+01 b.62.1.4,d.74.5.1 149466,149467 1rztA 331 3.67e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2iqhA 499 3.69e+01 e.75.1.1 147774 3egwA 1244 3.73e+01 3l1lA 445 3.75e+01 3i04M 728 3.75e+01 1vrmA 325 3.83e+01 d.96.2.1 120472 2oayA 391 3.88e+01 1goiA 499 3.95e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2efkA 301 3.99e+01 a.238.1.4 146815 2pidA 356 4.02e+01 3ed5A 238 4.06e+01 1tg7A 971 4.10e+01 b.149.1.1,b.18.1.27,b.18.1.27,b.71.1.5,c.1.8.14 112418,112419,112420,112421,112422 1j8yF 297 4.14e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1qtqA 553 4.17e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 3etfA 462 4.27e+01 1jnyA 435 4.39e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 2b7oA 464 4.42e+01 c.1.10.8 128047 3enkA 341 4.52e+01 3hw5A 261 4.55e+01 2btzA 394 4.58e+01 2q0zX 339 4.66e+01 a.289.1.1,b.1.18.22 149993,149994 1q16A 1247 4.72e+01 b.52.2.2,c.81.1.1 95546,95547 2weyA 343 4.74e+01 3ch3X 265 4.74e+01 2e87A 357 4.82e+01 1djuA 388 5.00e+01 1bjwA c.67.1.1 59116 1ccwB 483 5.01e+01 1cb7B c.1.19.2 29646 3dg9A 248 5.04e+01 1y5iA 1246 5.05e+01 b.52.2.2,c.81.1.1 122639,122640 2qveA 526 5.10e+01 2rjrA 537 5.15e+01 2ar0A 541 5.15e+01 c.66.1.45 127185 2og4A 254 5.20e+01 3c4hA 357 5.26e+01 3dlwA 411 5.28e+01 1xcrA 316 5.42e+01 d.290.1.2 121860 1ltlA 279 5.46e+01 b.40.4.11 84701 1a8h 500 5.66e+01 1a8h 2okcA 445 5.68e+01 c.66.1.45 148801 1t0qA 498 5.78e+01 a.25.1.2 106220 1xkgA 312 5.80e+01 d.3.1.1 122081 2hd5A 359 5.80e+01 d.3.1.9 145293 1gdeA 389 5.83e+01 c.67.1.1 60456 4eugA 229 6.00e+01 3eugA c.18.1.1 31019 1htyA 1015 6.09e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1tv9A 335 6.15e+01 a.60.6.1,a.60.12.1,d.218.1.2 112675,112676,112677 1w36B 1180 6.17e+01 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 1iapA 211 6.20e+01 a.91.1.1 62119 1dl2A 511 6.24e+01 1dl2A a.102.2.1 18844 2wbfX 265 6.35e+01 2nysA 176 6.35e+01 b.136.1.2 148518 2ekgA 327 6.38e+01 1t90A 486 6.45e+01 1duvG 333 6.61e+01 1othA c.78.1.1,c.78.1.1 35228,35229 1izoA 417 6.63e+01 a.104.1.1 83851 2incA 491 6.64e+01 a.25.1.2 137524 2v4bA 300 6.73e+01 2i6qA 517 6.81e+01 3gueA 484 6.86e+01 1vemA 516 6.87e+01 b.3.1.1,c.1.8.1 120021,120022 2vrwB 406 6.89e+01 1w99A 558 6.90e+01 3l6eA 235 6.95e+01 1fmtA 314 7.01e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1fc6A 388 7.04e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 2rh1A 500 7.06e+01 1z5zA 271 7.07e+01 c.37.1.19 124499 3c1mA 473 7.10e+01 1bf5A 545 7.17e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2dbnA 461 7.17e+01 2hgsA 474 7.18e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1itcA 516 7.26e+01 b.3.1.1,c.1.8.1 83705,83706 3ixlA 240 7.27e+01 3a1nA 317 7.35e+01 3cikA 689 7.39e+01 3hx0A 335 7.40e+01 2ffjA 300 7.45e+01 e.50.1.1 133387 3krwA 688 7.51e+01 3k2oA 336 7.54e+01 1dbhA 354 7.55e+01 1awe a.87.1.1,b.55.1.1 18514,26967 2wk2A 540 7.56e+01 3ftbA 361 7.75e+01 1s3rA 535 7.81e+01 1qwnA 1045 7.85e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489