# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3i4gA 528 8.37e-49 3jq1A 481 2.44e-47 3kezA 461 2.00e-46 3ihvA 535 2.34e-46 3jysA 499 9.16e-45 3cghA 516 5.66e-41 a.118.8.6 156618 3gzsA 515 3.30e-40 3hdxA 478 1.08e-39 3l22A 441 4.21e-39 3ckcA 527 1.96e-38 a.118.8.6 156736 3ejnA 474 3.36e-38 a.118.8.6 158180 3lewA 495 6.05e-37 3jq0A 493 6.40e-37 3iv0A 481 5.27e-35 3ehmA 532 2.57e-33 3fdhA 499 1.98e-31 1hh8A 213 6.00e-02 1e96B a.118.8.1 61042 1wm5A 208 9.18e-02 a.118.8.1 121028 2uy1A 493 5.54e-01 2zwsA 646 1.54e+00 1xnfA 275 2.11e+00 a.118.8.1 115580 3iegA 359 2.33e+00 2g37A 327 2.43e+00 2zxcA 646 3.52e+00 1hz4A 373 3.80e+00 a.118.8.2 65960 1ls1A 295 4.20e+00 a.24.13.1,c.37.1.10 78170,78171 2vxrA 482 5.04e+00 1jx6A 342 5.09e+00 c.93.1.1 67406 2ekgA 327 5.73e+00 1ltlA 279 6.02e+00 b.40.4.11 84701 2nx2A 181 6.13e+00 c.129.1.2 148498 1fnnA 389 6.98e+00 1fnnA a.4.5.11,c.37.1.20 16129,32426 2pmvA 399 7.81e+00 3jrtA 192 8.07e+00 3k9vA 482 8.48e+00 1ji6A 589 9.45e+00 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1zh8A 340 9.57e+00 c.2.1.3,d.81.1.5 125077,125078 3lm4A 339 1.10e+01 2wqhA 125 1.13e+01 1rl3A 288 1.16e+01 b.82.3.2,b.82.3.2 104975,104976 1xcrA 316 1.22e+01 d.290.1.2 121860 1ufaA 520 1.25e+01 a.8.3.3,c.6.2.4 99329,99330 3hd0A 237 1.32e+01 1ddgA 374 1.35e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 3a5vA 397 1.35e+01 2w36A 225 1.35e+01 2z67A 456 1.40e+01 c.67.1.9 154170 1geeA 261 1.50e+01 c.2.1.2 90509 2clyA 214 1.58e+01 f.52.1.1 145042 1upkA 341 1.59e+01 a.118.1.15 99758 1b5qA 472 1.60e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 3kq4A 393 1.60e+01 2o34A 250 1.69e+01 d.96.2.2 148565 3edtB 283 1.74e+01 1rvgA 305 1.83e+01 c.1.10.2 97920 1xwnA 174 1.90e+01 b.62.1.1 122404 1j1bA 420 1.90e+01 d.144.1.7 90758 2pnfA 248 1.90e+01 2x59A 761 1.90e+01 1vbgA 876 1.92e+01 c.1.12.2,c.8.1.1,d.142.1.5 119951,119952,119953 2depA 356 1.93e+01 2wazX 356 1.95e+01 1ne6A 283 1.97e+01 b.82.3.2,b.82.3.2 91831,91832 1xkgA 312 2.00e+01 d.3.1.1 122081 2e0cA 409 2.04e+01 3gvxA 290 2.13e+01 1r85A 379 2.13e+01 c.1.8.3 104839 1gcoA 261 2.15e+01 1ybvA c.2.1.2 29884 2fuvA 549 2.17e+01 1zthA 258 2.18e+01 2ousA 331 2.21e+01 1iuqA 367 2.30e+01 c.112.1.1 90703 1adt 356 2.35e+01 1anv 1adtA 356 2.35e+01 a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 3e03A 274 2.53e+01 2vq2A 225 2.54e+01 3a11A 338 2.55e+01 2b05A 246 2.64e+01 1xjjA 644 2.68e+01 3gb2A 353 2.73e+01 3ddlA 273 2.84e+01 1qi9A 556 3.03e+01 1qhbA a.111.1.2 19053 2ifuA 307 3.05e+01 2ga8A 359 3.06e+01 1ur1A 378 3.09e+01 c.1.8.3 99804 1e6pA 499 3.13e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 3fqiA 417 3.15e+01 2jc9A 555 3.15e+01 3bb0A 609 3.17e+01 2iswA 323 3.18e+01 2cpcA 113 3.18e+01 1qjbA 245 3.27e+01 1qjaA a.118.7.1 19202 2im5A 394 3.33e+01 2wb0X 356 3.33e+01 1k30A 368 3.39e+01 c.112.1.1 68067 1ll2A 333 3.49e+01 c.68.1.14 74005 3lk41 286 3.58e+01 1b35C 282 3.63e+01 1b35C 3fhdA 508 3.65e+01 1jlvA 209 3.68e+01 a.45.1.1,c.47.1.5 71729,71730 1usgA 346 3.73e+01 c.93.1.1 99864 1c3wA 222 3.74e+01 1c3wA f.13.1.1 43405 2blfA 373 3.89e+01 2vzyA 218 3.91e+01 1y3nA 490 3.91e+01 c.94.1.1 122597 1iznA 286 3.95e+01 e.43.1.1 83847 2qzcA 214 4.01e+01 1n4aA 252 4.07e+01 c.92.2.2 85317 1n2zA 245 4.14e+01 c.92.2.2 79865 3fnrA 464 4.21e+01 3go9A 492 4.24e+01 1isiA 265 4.27e+01 c.23.14.3 71394 2citA 282 4.30e+01 c.1.8.3 130499 3fxhA 135 4.31e+01 1izoA 417 4.47e+01 a.104.1.1 83851 2o6yA 521 4.48e+01 1xrsA 516 4.58e+01 c.1.19.4 115883 1dp4A 435 4.62e+01 1dp4A c.93.1.1 35710 1wvgA 359 4.69e+01 c.2.1.2 121339 3a09A 490 4.70e+01 1anv 356 4.74e+01 1anv 2h4vA 320 4.87e+01 3cf4A 807 4.88e+01 2bngA 149 4.88e+01 d.17.4.8 146156 1goiA 499 4.89e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2x1yA 761 4.97e+01 1e4yA 214 4.98e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1v2aA 210 5.02e+01 a.45.1.1,c.47.1.5 100263,100264 1x91A 153 5.15e+01 a.29.6.1 114975 1b5eA 246 5.16e+01 1b5eA d.117.1.1 41056 2nysA 176 5.20e+01 b.136.1.2 148518 2v9kA 530 5.22e+01 2oaaA 249 5.29e+01 1jr2A 286 5.30e+01 c.113.1.1 67111 2pkeA 251 5.41e+01 3bc9A 599 5.46e+01 2bd0A 244 5.47e+01 c.2.1.2 128321 2qmqA 286 5.51e+01 1qtqA 553 5.51e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1vl8A 267 5.64e+01 c.2.1.2 108733 2okuA 131 5.72e+01 a.48.5.1 148809 3isnD 427 5.77e+01 3lvtA 899 5.82e+01 2ra1A 412 5.85e+01 1vpbA 451 5.88e+01 d.283.1.1 113950 3e6uA 411 5.97e+01 3eskA 129 6.15e+01 1izmA 184 6.16e+01 a.199.1.1 90725 3bblA 287 6.20e+01 1sx7A 164 6.26e+01 d.2.1.3 112140 1ecpA 238 6.35e+01 1ecpA c.56.2.1 33775 1vnsA 609 6.37e+01 a.111.1.3 19061 2bv9A 290 6.41e+01 c.1.8.3 129242 3lw1A 253 6.42e+01 1vns 609 6.43e+01 1vns 1o70A 324 6.47e+01 b.118.1.1,b.118.1.1 81115,81116 2weyA 343 6.48e+01 3gzuC 397 6.49e+01 2x7kA 166 6.53e+01 3hazA 1001 6.65e+01 3kvoA 346 6.67e+01 1j1dB 106 6.69e+01 h.1.25.1 83964 3etcA 580 6.81e+01 1gz6A 319 6.84e+01 c.2.1.2 76410 1s1dA 331 6.85e+01 b.67.3.1 98344 3kz4C 397 7.12e+01 1rktA 205 7.12e+01 a.4.1.9,a.121.1.1 97623,97624 1sxjC 340 7.13e+01 a.80.1.1,c.37.1.20 106085,106086 2p91A 285 7.13e+01 1u0fA 564 7.37e+01 c.80.1.2 112912 2fafA 608 7.38e+01 2p2sA 336 7.46e+01 1g5aA 628 7.64e+01 b.71.1.1,c.1.8.1 65152,65153 3fhiB 154 7.71e+01 2gxfA 142 7.76e+01 d.17.4.22 147191 1bf5A 545 7.97e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526