# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3ejnA 451 2.980e-47 a.118.8.6 158180 3fdhA 473 3.989e-43 3gzsA 496 9.765e-38 3ehmA 511 5.129e-25 3cghA 508 1.609e-24 a.118.8.6 156618 3kezA 448 9.904e-16 3l22A 430 2.403e-15 3lewA 477 7.558e-15 3hdxA 457 3.901e-11 3jq1A 463 1.326e-10 3iv0A 467 1.482e-09 3jq0A 479 6.793e-09 3jysA 480 6.894e-09 3i4gA 514 3.664e-08 3ihvA 536 7.670e-07 3ckcA 502 1.055e-06 a.118.8.6 156736 3eatX 279 2.896e-01 2gp8A 41 6.764e-01 2gp8A j.58.1.1 46343 1gp8A 41 8.910e-01 2gp8A j.58.1.1 46342 1gq2A 556 1.250e+00 c.2.1.7 70308 c.58.1.3 70309 1o0sA 603 1.414e+00 c.2.1.7 86540 c.58.1.3 86541 1lw3A 514 1.838e+00 b.55.1.8 91152 c.45.1.3 91153 3d48R 196 2.585e+00 b.1.2.1 157289 b.1.2.1 157290 1qr6A 552 2.740e+00 1qr6A c.2.1.7 30293 c.58.1.3 33941 1ybqB 390 2.879e+00 3gnhA 402 3.304e+00 1p8kZ 255 3.409e+00 d.95.2.1 94361 d.95.2.1 94362 2ab5A 262 3.762e+00 1sffA 426 4.026e+00 c.67.1.4 105482 1nx8A 249 4.578e+00 b.82.2.8 86374 3d3aA 605 4.877e+00 3ff4A 122 5.226e+00 1otjA 282 6.058e+00 b.82.2.5 93517 2d59A 142 6.339e+00 c.2.1.8 131266 1wfwA 75 6.517e+00 b.34.2.1 114595 2jixB 217 7.172e+00 b.1.2.1 148107 b.1.2.1 148108 3m4pA 436 8.784e+00 2ahoA 402 1.002e+01 b.43.3.1 126767 b.44.1.1 126768 c.37.1.8 126769 3fkjA 336 1.048e+01 3i7fA 486 1.111e+01 3fi7A 178 1.112e+01 1iukA 137 1.121e+01 c.2.1.8 83712 1flcB 163 1.174e+01 1flcB h.3.1.1 45716 1f6fB 196 1.206e+01 1axiB b.1.2.1 22033 b.1.2.1 22034 3bh1A 487 1.243e+01 3hagA 469 1.243e+01 2h8lA 233 1.313e+01 3ka7A 423 1.467e+01 1q90N 32 1.492e+01 f.23.27.1 96247 1tf0B 54 1.498e+01 a.8.1.2 106825 2vhlA 393 1.543e+01 1kdoA 224 1.644e+01 c.37.1.1 68478 1ad1A 265 1.756e+01 1aj2 c.1.21.1 29668 2fvgA 312 1.758e+01 b.49.3.1 134201 c.56.5.4 134202 2r8bA 205 1.820e+01 c.69.1.14 151696 2k2uB 36 1.931e+01 2qn6A 394 1.950e+01 b.43.3.1 150911 b.44.1.1 150912 c.37.1.8 150913 2cwoA 166 2.030e+01 1sfcC 78 2.047e+01 1sfcC h.1.15.1 45645 1cd9B 207 2.049e+01 1cto b.1.2.1 22041 b.1.2.1 22042 1c0pA 364 2.104e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1an9A 341 2.169e+01 1an9A c.4.1.2 30617 d.16.1.3 37904 2wbqA 333 2.301e+01 1kx5B 103 2.377e+01 a.22.1.1 77594 1oihA 255 2.403e+01 b.82.2.5 93051 3khyA 385 2.418e+01 3hhrB 196 2.620e+01 1axiB b.1.2.1 22005 b.1.2.1 22006 1a9xA 1059 2.627e+01 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 1sxjB 317 2.671e+01 a.80.1.1 106083 c.37.1.20 106084 1sw5B 271 2.732e+01 c.94.1.1 106070 2hdzA 67 2.741e+01 1jchA 469 2.815e+01 b.101.1.1 66491 b.110.1.1 66492 h.4.9.1 66493 1nynA 112 2.867e+01 d.235.1.1 86410 1hvc 204 3.089e+01 1hvc 2vefA 280 3.331e+01 2yv5A 294 3.465e+01 1c3d 295 3.475e+01 1c3d 1hx6A 371 3.551e+01 1cjdA b.121.2.1 58995 b.121.2.1 58996 1bquA 209 3.689e+01 1bquA b.1.2.1 22066 b.1.2.1 22067 1x89A 175 3.727e+01 b.60.1.1 121799 2puzA 405 3.822e+01 b.92.1.10 149873 c.1.9.17 149874 1xrtA 370 3.837e+01 b.92.1.3 122258 c.1.9.6 122259 1y81A 117 3.929e+01 c.2.1.8 122731 1qd6C 241 3.949e+01 1qd5A 1dfoA 417 3.992e+01 1bj4A c.67.1.4 34480