# List of top-scoring protein chains for t2k.w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cghA 516 1.36e-51 a.118.8.6 156618 3gzsA 515 5.64e-50 3ejnA 474 5.05e-47 a.118.8.6 158180 3ehmA 532 1.72e-43 3fdhA 499 6.80e-37 3i4gA 528 1.95e-31 3kezA 461 6.16e-31 3jq1A 481 7.02e-30 3jq0A 493 1.00e-29 3ihvA 535 2.18e-29 3l22A 441 2.15e-27 3iv0A 481 6.32e-27 3lewA 495 1.05e-23 3hdxA 478 1.45e-23 3ckcA 527 2.14e-23 a.118.8.6 156736 3jysA 499 4.48e-23 1bwvA 493 5.07e-01 1burA c.1.14.1 29372 d.58.9.1 39278 2wqhA 125 8.03e-01 2hyzA 136 1.35e+00 1na0A 125 1.68e+00 k.38.1.1 85479 1tiaA 279 1.69e+00 c.69.1.17 34737 2o2kA 355 2.20e+00 2pc4A 369 2.30e+00 1a5cA 368 2.30e+00 1fbaA c.1.10.1 29148 2i1yA 301 3.26e+00 2qr4A 587 5.07e+00 2e0wA 556 5.33e+00 d.153.1.6 131957 3dzxA 346 5.58e+00 3hn3A 613 5.65e+00 1bhgA 613 5.65e+00 1bhgA b.1.4.1 22161 b.18.1.5 23766 c.1.8.3 28889 2no8A 86 6.74e+00 1o7xA 377 6.79e+00 a.103.1.1 81171 1pfzA 380 7.06e+00 1smrA b.50.1.2 26881 2bjuA 453 7.81e+00 b.50.1.2 128633 1wovA 250 8.13e+00 a.132.1.1 121124 2hpaA 342 8.51e+00 1cviA c.60.1.2 33985 1cviA 342 8.51e+00 1cviA c.60.1.2 33989 1xnwA 530 9.95e+00 c.14.1.4 115655 c.14.1.4 115656 1nd6A 354 1.06e+01 c.60.1.2 80407 1sjjA 863 1.10e+01 i.15.1.1 98894 2qepA 304 1.19e+01 3kzwA 515 1.31e+01 1xo6A 530 1.35e+01 c.14.1.4 115682 c.14.1.4 115683 3iam5 207 1.72e+01 2fug5 207 1.72e+01 1w3bA 388 1.84e+01 a.118.8.1 109149 2ywdA 191 1.85e+01 1tiiA 190 1.86e+01 1lt3A d.166.1.1 42238 2eu9A 355 1.88e+01 2al7A 186 1.99e+01 c.37.1.8 126972 1yr2A 741 1.99e+01 1dmuA 299 2.06e+01 1dmuA c.52.1.4 33294 2exeA 357 2.06e+01 1miqA 375 2.09e+01 b.50.1.2 79151 1zmzA 98 2.12e+01 3e0yA 181 2.13e+01 1na3A 91 2.17e+01 k.38.1.1 85481 2hdoA 209 2.24e+01 c.108.1.6 136345 1q5jA 249 2.25e+01 f.13.1.1 95898 1jg1A 235 2.31e+01 c.66.1.7 66661 1fjeB 175 2.40e+01 1fj7A d.58.7.1 39210 d.58.7.1 39211 1rlbE 174 2.42e+01 1aqb b.60.1.1 27090 2avpA 70 2.50e+01 k.38.1.1 127382 2wu6A 381 2.62e+01 3hluA 96 2.62e+01 1xdhA 331 2.66e+01 b.50.1.2 121870 1lf2A 331 2.66e+01 b.50.1.2 77914 1r85A 379 2.72e+01 c.1.8.3 104839 3hurA 395 2.78e+01 3hgfA 107 2.83e+01 1duvG 333 2.95e+01 1othA c.78.1.1 35228 c.78.1.1 35229 2rg4A 216 2.97e+01 1r86A 379 3.11e+01 c.1.8.3 118744 2igxA 329 3.15e+01 b.50.1.2 137404 3f9qA 329 3.15e+01 1kt5A 175 3.35e+01 b.60.1.1 84465 1ralA 308 3.35e+01 c.1.7.1 28698 2e66A 102 3.41e+01 1fnjA 127 3.51e+01 2chsA d.79.1.2 39776 3ga4A 178 3.55e+01 1fnkA 127 3.55e+01 2chsA d.79.1.2 39777 2e0cA 409 3.56e+01 2otcA 333 3.59e+01 1othA c.78.1.1 35234 c.78.1.1 35235 3bbnU 190 3.73e+01 2nyaA 792 3.74e+01 1dbfA 127 3.76e+01 2chsA d.79.1.2 39761 1wm5A 208 3.79e+01 a.118.8.1 121028 2bv5A 282 3.81e+01 1lehA 364 3.81e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 1hh8A 213 3.82e+01 1e96B a.118.8.1 61042 3fnsA 332 3.86e+01 1kt6A 183 3.90e+01 b.60.1.1 84466 1tjtA 250 3.96e+01 2x540 372 3.98e+01 1e96B 203 3.99e+01 1e96B a.118.8.1 19211