PFRMAT SS TARGET T0532 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0532.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 690 METHOD MODEL 1 M C 0.804 K C 0.414 R H 0.643 I H 0.881 N H 0.970 K H 0.994 Y H 0.997 I H 0.998 S H 0.996 L H 0.995 L H 0.996 L H 0.994 A H 0.992 T H 0.986 A H 0.974 L H 0.943 L H 0.895 A H 0.739 S C 0.369 C T 0.411 D T 0.453 K T 0.473 F T 0.326 D T 0.339 E T 0.314 I C 0.306 N T 0.471 T T 0.483 D T 0.759 P T 0.832 D T 0.732 A T 0.628 T C 0.454 T C 0.569 K H 0.357 V H 0.516 T H 0.500 S H 0.947 S H 0.954 L H 0.959 L H 0.955 A H 0.963 T H 0.965 G H 0.948 L H 0.965 L H 0.943 L H 0.911 D H 0.861 I H 0.813 T H 0.665 S H 0.572 S H 0.449 S H 0.360 A H 0.317 S H 0.303 K H 0.308 S H 0.309 F H 0.347 I H 0.354 Y H 0.351 D E 0.369 E E 0.432 L E 0.481 L E 0.470 A E 0.455 K E 0.400 Q E 0.360 M T 0.295 A T 0.387 W T 0.459 G T 0.436 E T 0.337 S E 0.383 M E 0.451 E E 0.437 D E 0.360 Y C 0.312 Q T 0.393 Y T 0.435 N T 0.407 V T 0.326 F H 0.385 G H 0.510 R H 0.643 S H 0.730 G H 0.802 F H 0.813 G H 0.822 G H 0.886 Y H 0.884 T H 0.831 T H 0.850 L H 0.911 I H 0.910 N H 0.933 A H 0.982 Q H 0.971 K H 0.959 M H 0.946 V H 0.919 E H 0.883 S H 0.672 V C 0.561 S C 0.541 D T 0.411 D T 0.400 N H 0.497 V H 0.630 N H 0.794 A H 0.892 Y H 0.951 D H 0.985 G H 0.993 L H 0.998 A H 0.999 H H 0.999 F H 0.999 I H 0.999 K H 0.998 A H 0.997 Y H 0.997 K H 0.997 I H 0.995 F H 0.993 Y H 0.988 M H 0.981 S H 0.964 M H 0.945 E H 0.937 M H 0.818 G C 0.602 D C 0.599 L C 0.490 P C 0.614 Y E 0.413 E E 0.593 E E 0.541 A E 0.371 L C 0.333 Q T 0.360 G T 0.484 E T 0.575 L T 0.637 G T 0.572 L T 0.492 V C 0.457 R C 0.581 P C 0.579 K C 0.564 Y C 0.589 N C 0.700 T C 0.746 Q H 0.950 K H 0.964 E H 0.972 V H 0.990 M H 0.990 N H 0.986 F H 0.986 I H 0.990 L H 0.990 S H 0.985 D H 0.981 L H 0.993 E H 0.989 T H 0.987 A H 0.981 Y H 0.971 E H 0.934 L H 0.822 F H 0.476 S T 0.393 T T 0.453 A T 0.533 K T 0.492 D T 0.429 F T 0.442 D T 0.468 G T 0.459 D T 0.373 P E 0.304 I E 0.304 L T 0.328 G T 0.399 G T 0.350 S H 0.555 I H 0.896 S H 0.979 K H 0.986 W H 0.989 K H 0.995 K H 0.994 A H 0.992 T H 0.988 T H 0.977 A H 0.925 F H 0.949 Q H 0.976 L H 0.978 K H 0.988 V H 0.987 L H 0.985 M H 0.985 H H 0.953 L H 0.878 S H 0.652 K C 0.418 K C 0.519 E C 0.558 S H 0.561 D H 0.655 A H 0.612 D H 0.689 L H 0.867 K H 0.883 V H 0.940 K H 0.952 E H 0.973 R H 0.972 F H 0.960 A H 0.937 R H 0.900 I H 0.840 V H 0.553 A H 0.429 S T 0.354 G T 0.423 S C 0.507 L E 0.471 M E 0.762 E E 0.788 S E 0.665 N T 0.422 E T 0.608 D T 0.584 N T 0.414 L E 0.470 Q E 0.684 M E 0.754 K E 0.656 Y E 0.499 A T 0.354 D T 0.407 K T 0.448 A T 0.446 N T 0.447 T T 0.428 V C 0.370 Y C 0.385 P C 0.313 F H 0.257 H E 0.295 N E 0.364 T E 0.427 N E 0.428 T E 0.419 K E 0.337 H T 0.348 A T 0.423 G T 0.465 Y T 0.317 A H 0.315 M H 0.379 L H 0.501 S H 0.570 T H 0.874 M H 0.880 L H 0.930 I H 0.930 D H 0.919 K H 0.913 F H 0.885 K H 0.795 A H 0.363 T T 0.500 G T 0.528 D T 0.546 I C 0.422 R T 0.388 M T 0.344 F E 0.272 Y E 0.434 Y E 0.636 A E 0.681 K E 0.571 P E 0.350 A T 0.408 K T 0.452 A T 0.399 K T 0.341 L T 0.336 N T 0.347 E T 0.340 G C 0.322 V C 0.323 T C 0.312 A T 0.325 D T 0.344 S T 0.340 W T 0.318 D T 0.306 A C 0.302 Y C 0.320 I C 0.350 G C 0.376 T C 0.364 D T 0.349 P T 0.367 S T 0.365 L T 0.338 P C 0.315 F C 0.297 E C 0.309 Q C 0.300 I T 0.311 E T 0.312 K T 0.314 A C 0.297 Y E 0.292 A E 0.316 T E 0.335 E E 0.333 Q E 0.338 Y E 0.348 S E 0.322 G E 0.300 F C 0.293 N T 0.304 A T 0.312 R T 0.319 Y T 0.316 T T 0.321 D T 0.332 Y T 0.360 P T 0.461 S T 0.502 G T 0.457 E T 0.392 P C 0.496 V C 0.349 V H 0.492 R H 0.634 L H 0.859 G H 0.909 Y H 0.992 A H 0.995 E H 0.999 Q H 0.999 N H 0.998 F H 0.998 I H 0.997 L H 0.998 A H 0.998 E H 0.998 A H 0.996 A H 0.993 V H 0.983 R H 0.953 G H 0.759 W C 0.515 I C 0.510 S C 0.385 G H 0.381 D H 0.566 A H 0.870 S H 0.893 A H 0.913 Y H 0.944 Y H 0.966 K H 0.986 K H 0.977 A H 0.973 I H 0.972 R H 0.948 A H 0.952 H H 0.888 M H 0.853 E H 0.684 F H 0.551 I H 0.473 A C 0.344 S C 0.319 N C 0.365 T T 0.292 P T 0.270 D T 0.244 E H 0.265 E H 0.254 V C 0.247 Y C 0.272 H T 0.330 H T 0.435 G T 0.468 H T 0.430 P T 0.396 I T 0.327 T C 0.278 E H 0.287 E C 0.291 A H 0.272 I H 0.278 A H 0.302 A H 0.314 F H 0.293 L H 0.300 E H 0.331 T C 0.276 P H 0.320 A H 0.308 I H 0.313 Q T 0.377 L T 0.397 S T 0.424 G T 0.359 E C 0.405 K H 0.662 E H 0.860 A H 0.897 D H 0.928 I H 0.946 E H 0.960 K H 0.970 I H 0.965 L H 0.980 T H 0.983 Q H 0.984 R H 0.977 Y H 0.966 L H 0.957 A H 0.946 S H 0.912 F H 0.731 M H 0.467 Q H 0.390 H T 0.505 P T 0.427 Y T 0.354 D H 0.440 V H 0.409 Y H 0.696 Y H 0.855 D H 0.878 Y H 0.906 R H 0.897 R H 0.859 T H 0.604 G C 0.796 Y C 0.669 P C 0.445 V C 0.307 L C 0.299 P C 0.388 I C 0.411 N C 0.408 P C 0.360 A T 0.402 T T 0.458 N T 0.510 R T 0.475 N T 0.427 T C 0.402 M T 0.460 N T 0.589 D T 0.541 R T 0.396 L C 0.490 P C 0.462 M E 0.570 R E 0.433 W C 0.524 M C 0.667 Y C 0.744 P C 0.515 K T 0.486 S T 0.522 E T 0.428 S T 0.294 D T 0.301 Y C 0.395 N C 0.656 L H 0.891 E H 0.921 H H 0.937 Q H 0.970 N H 0.984 E H 0.984 A H 0.984 L H 0.962 E H 0.942 R H 0.878 Q H 0.652 F H 0.317 G C 0.566 G C 0.509 V C 0.465 D T 0.425 D T 0.549 V T 0.475 N T 0.450 K E 0.388 L E 0.463 M E 0.558 W E 0.494 I C 0.393 L C 0.621 Q C 0.728 END