# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cghA 516 4.35e-47 a.118.8.6 156618 3gzsA 515 5.19e-45 3ejnA 474 7.57e-41 a.118.8.6 158180 3ehmA 532 1.75e-39 3fdhA 499 3.46e-35 3kezA 461 1.80e-28 3i4gA 528 4.32e-27 3jq0A 493 1.72e-26 3jq1A 481 2.37e-26 3ihvA 535 2.99e-25 3l22A 441 4.53e-24 3lewA 495 2.16e-23 3iv0A 481 3.41e-23 3hdxA 478 3.65e-22 3jysA 499 4.53e-22 3ckcA 527 1.23e-21 a.118.8.6 156736 3gcb 470 4.46e-02 3gcb 3gcbA 470 4.46e-02 d.3.1.1 37032 1gcb 454 7.65e-02 3gcb 2wqhA 125 8.54e-02 2e01A 457 1.20e-01 1na3A 91 4.60e-01 k.38.1.1 85481 1djuA 388 6.66e-01 1bjwA c.67.1.1 59116 1gdeA 389 8.70e-01 c.67.1.1 60456 2f4qA 346 9.64e-01 1qjwA 365 9.78e-01 1bvwA c.6.1.1 30657 1ayx 492 1.05e+00 1ayx 2fbaA 492 1.12e+00 a.102.1.1 133239 2bpqA 373 1.17e+00 1ng1 294 1.43e+00 1ng1 1jpnA 296 1.54e+00 a.24.13.1 67039 c.37.1.10 67040 1ls1A 295 1.61e+00 a.24.13.1 78170 c.37.1.10 78171 3kl4A 433 3.91e+00 1bw0A 416 4.28e+00 1bw0A c.67.1.1 34385 2wiyA 394 4.56e+00 2avpA 70 5.11e+00 k.38.1.1 127382 2fuvA 549 5.18e+00 2rbdA 171 5.72e+00 2zblA 421 6.24e+00 3hfxA 504 6.36e+00 1dysA 348 6.52e+00 1bvwA c.6.1.1 30669 1yqgA 263 6.84e+00 a.100.1.10 145920 c.2.1.6 145921 1wdkC 390 6.87e+00 c.95.1.1 109258 c.95.1.1 109259 3edtB 283 6.91e+00 2psoA 237 7.13e+00 d.129.3.2 149824 2afaA 425 7.32e+00 a.102.1.3 126668 1ei1A 391 7.55e+00 1aj6 d.14.1.3 37570 d.122.1.2 41104 2fepA 289 8.03e+00 1wm5A 208 8.06e+00 a.118.8.1 121028 1pea 385 8.07e+00 1pea 1peaA 385 8.07e+00 c.93.1.1 35662 1ezfA 340 8.11e+00 1ezfA a.128.1.2 19440 3cp2A 649 8.17e+00 1hh8A 213 8.49e+00 1e96B a.118.8.1 61042 3a9zA 432 9.40e+00 2b5dX 528 9.76e+00 a.8.3.3 127886 c.6.2.4 127887 1hqsA 423 9.79e+00 1iso c.77.1.1 61154 2j6vA 301 9.96e+00 3c3yA 237 9.97e+00 1e96B 203 1.02e+01 1e96B a.118.8.1 19211 1tml 286 1.05e+01 1tml 1rvgA 305 1.08e+01 c.1.10.2 97920 2e0cA 409 1.10e+01 3c0qA 301 1.18e+01 3hurA 395 1.22e+01 1wfxA 186 1.24e+01 d.166.1.5 114596 3bz1B 510 1.24e+01 3b2yA 275 1.27e+01 1mw7A 240 1.29e+01 e.39.1.1 79557 1htyA 1015 1.34e+01 a.8.3.1 83064 b.30.5.6 83065 c.6.2.1 83066 3gwjA 674 1.36e+01 1eu1A 780 1.40e+01 1dmr b.52.2.2 26903 c.81.1.1 35311 2axtB 510 1.45e+01 f.55.1.1 144927 1q0rA 298 1.53e+01 c.69.1.28 95508 2zxiA 637 1.63e+01 2pi6A 361 1.64e+01 c.1.8.5 149501 d.26.3.1 149502 5csmA 256 1.66e+01 5csmA a.130.1.2 19494 2x6hA 696 1.69e+01 2e9yA 316 1.72e+01 1a5cA 368 1.75e+01 1fbaA c.1.10.1 29148 3dmsA 427 1.77e+01 1cb8A 678 1.77e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 2i1yA 301 1.83e+01 1jnyA 435 1.84e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1eluA 390 1.85e+01 1elqA c.67.1.3 34434 1elqA 390 1.86e+01 1elqA c.67.1.3 34436 3l1lA 445 1.91e+01 2zb6A 481 1.99e+01 2is6A 680 1.99e+01 3a9sA 595 2.00e+01 2zbwA 335 2.05e+01 1lfwA 470 2.08e+01 c.56.5.4 77942 d.58.19.1 77943 2rijA 387 2.19e+01 2x42A 721 2.23e+01 1k7hA 476 2.28e+01 c.76.1.1 72101 1f4pA 147 2.29e+01 5nul c.23.5.1 59651 1h2kA 349 2.29e+01 b.82.2.6 76572 2cfuA 658 2.30e+01 d.106.1.3 146386 d.157.1.13 146387 1vrmA 325 2.30e+01 d.96.2.1 120472 1csmA 256 2.31e+01 5csmA a.130.1.2 19495 2bodX 286 2.34e+01 c.6.1.1 128909 2qmiA 447 2.35e+01 1jqoA 970 2.38e+01 c.1.12.3 77160 2e4uA 555 2.39e+01 1q2lA 939 2.41e+01 d.185.1.1 118731 d.185.1.1 118732 d.185.1.1 118733 d.185.1.1 118734 3ga4A 178 2.43e+01 2pnkA 428 2.46e+01 c.1.9.8 149674 2bvwA 362 2.50e+01 1bvwA c.6.1.1 30666 2vh4A 381 2.51e+01 1oc7A 364 2.53e+01 c.6.1.1 86794 2x41A 721 2.58e+01 1duvG 333 2.59e+01 1othA c.78.1.1 35228 c.78.1.1 35229 1kbjA 412 2.59e+01 c.1.4.1 72280 2bogX 286 2.67e+01 2pefA 373 2.68e+01 3l6dA 306 2.71e+01 1g73C 121 2.73e+01 1g3fA g.52.1.1 45375 1wteA 272 2.78e+01 c.52.1.29 114876 3c96A 415 2.79e+01 c.3.1.2 156122 d.16.1.2 156123 1bvwA 360 2.85e+01 1bvwA c.6.1.1 30668 2ar0A 541 2.86e+01 c.66.1.45 127185 3hl5A 95 2.94e+01 2i3oA 516 2.97e+01 d.153.1.6 137027 1pmd 675 2.99e+01 1pmd 2qeeA 437 3.01e+01 1bjwA 382 3.02e+01 1bjwA c.67.1.1 34349 2bmaA 470 3.12e+01 3kq4A 393 3.13e+01 1qwnA 1045 3.13e+01 a.8.3.1 96487 b.30.5.6 96488 c.6.2.1 96489 1mzeA 351 3.15e+01 b.82.2.6 79694 1txnA 328 3.19e+01 d.248.1.1 112779 2o11A 407 3.20e+01 1j9eA 147 3.25e+01 c.23.5.1 62756 1pmi 440 3.25e+01 1pmi 1pmiA 440 3.25e+01 b.82.1.3 28114 1konA 249 3.27e+01 e.39.1.1 72823 1b78A 193 3.29e+01 1b78A c.51.4.1 33221 2e7zA 727 3.33e+01 2zygA 480 3.35e+01 2wbyA 990 3.36e+01 1auk 489 3.36e+01 1auk 1aukA 489 3.36e+01 c.76.1.2 35030 2c7yA 404 3.37e+01 1qcwA 410 3.44e+01 1gox c.1.4.1 28622 1t5oA 351 3.45e+01 c.124.1.5 106459 1cnzA 363 3.45e+01 1cnzA c.77.1.1 35061 2i3hA 133 3.46e+01 g.52.1.1 137023 2b7oA 464 3.56e+01 c.1.10.8 128047 1qrdA 273 3.56e+01 1d4aA c.23.5.3 31217 2zxcA 646 3.58e+01 3bvxA 1045 3.59e+01 a.8.3.1 155676 b.30.5.6 155677 c.6.2.1 155678 3gzdA 440 3.61e+01 3k9vA 482 3.62e+01 2ow6A 1045 3.67e+01 a.8.3.1 149039 b.30.5.6 149040 c.6.2.1 149041 2ifaA 208 3.68e+01 d.90.1.1 137329 1aru 344 3.70e+01 1arv 1arv 344 3.70e+01 1arv 2zy5A 546 3.71e+01 1nxcA 478 3.72e+01 a.102.2.1 92293 1a8h 500 3.72e+01 1a8h 3czgA 644 3.75e+01 1b5pA 385 3.79e+01 c.67.1.1 90403 1ihp 438 3.88e+01 1ihp 1jg1A 235 3.89e+01 c.66.1.7 66661 1tqnA 486 3.93e+01 a.104.1.1 107238 1h0cA 392 4.00e+01 c.67.1.3 83424