# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3cghA 516 3.60e-55 a.118.8.6 156618 3gzsA 515 9.52e-53 3ejnA 474 6.29e-48 a.118.8.6 158180 3ehmA 532 1.43e-46 3fdhA 499 1.98e-40 3kezA 461 3.60e-34 3i4gA 528 6.02e-33 3jq0A 493 1.09e-31 3jq1A 481 1.51e-31 3ihvA 535 7.48e-30 3iv0A 481 2.93e-29 3l22A 441 3.98e-29 3lewA 495 7.33e-28 3hdxA 478 3.31e-26 3jysA 499 4.84e-26 3ckcA 527 6.33e-26 a.118.8.6 156736 2wqhA 125 1.98e-02 1na3A 91 8.97e-02 k.38.1.1 85481 2bpqA 373 1.50e-01 1ng1 294 4.08e-01 1ng1 2fbaA 492 4.23e-01 a.102.1.1 133239 1ayx 492 4.65e-01 1ayx 1jpnA 296 4.89e-01 a.24.13.1 67039 c.37.1.10 67040 1ls1A 295 6.35e-01 a.24.13.1 78170 c.37.1.10 78171 2rbdA 171 9.66e-01 2fuvA 549 9.92e-01 2f4qA 346 1.05e+00 2axtB 510 1.10e+00 f.55.1.1 144927 1djuA 388 1.18e+00 1bjwA c.67.1.1 59116 1duvG 333 1.26e+00 1othA c.78.1.1 35228 c.78.1.1 35229 3gcb 470 1.27e+00 3gcb 3gcbA 470 1.27e+00 d.3.1.1 37032 3b46A 447 1.27e+00 1qjwA 365 1.29e+00 1bvwA c.6.1.1 30657 3kl4A 433 1.43e+00 1wdkC 390 1.43e+00 c.95.1.1 109258 c.95.1.1 109259 1bw0A 416 1.71e+00 1bw0A c.67.1.1 34385 1gcb 454 1.74e+00 3gcb 2is6A 680 2.02e+00 1pea 385 2.02e+00 1pea 1peaA 385 2.02e+00 c.93.1.1 35662 3edtB 283 2.23e+00 2i3oA 516 2.35e+00 d.153.1.6 137027 1dysA 348 2.42e+00 1bvwA c.6.1.1 30669 3hfxA 504 2.49e+00 2cfuA 658 2.56e+00 d.106.1.3 146386 d.157.1.13 146387 1wteA 272 2.77e+00 c.52.1.29 114876 2e0cA 409 2.93e+00 3kq4A 393 3.00e+00 2e9yA 316 3.00e+00 3hurA 395 3.12e+00 3c3yA 237 3.30e+00 1hh8A 213 3.79e+00 1e96B a.118.8.1 61042 3dmsA 427 3.83e+00 2e01A 457 3.92e+00 1vrmA 325 3.92e+00 d.96.2.1 120472 2i1yA 301 4.06e+00 1e96B 203 4.13e+00 1e96B a.118.8.1 19211 1gdeA 389 4.16e+00 c.67.1.1 60456 1wm5A 208 4.18e+00 a.118.8.1 121028 1hqsA 423 4.37e+00 1iso c.77.1.1 61154 2avpA 70 4.41e+00 k.38.1.1 127382 1a5cA 368 4.75e+00 1fbaA c.1.10.1 29148 1o17A 345 4.80e+00 a.46.2.1 80765 c.27.1.1 80766 2pefA 373 4.90e+00 2pnkA 428 5.03e+00 c.1.9.8 149674 1jnyA 435 5.04e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1pb1A 416 5.14e+00 c.77.1.1 88014 1gzsB 165 5.22e+00 a.168.1.1 76425 2vh4A 381 5.23e+00 2wiyA 394 5.52e+00 1yqgA 263 5.67e+00 a.100.1.10 145920 c.2.1.6 145921 1wfxA 186 5.79e+00 d.166.1.5 114596 2x41A 721 6.19e+00 1ezfA 340 6.19e+00 1ezfA a.128.1.2 19440 1lfwA 470 6.38e+00 c.56.5.4 77942 d.58.19.1 77943 1cb8A 678 6.55e+00 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 2ar0A 541 6.75e+00 c.66.1.45 127185 1jqoA 970 6.82e+00 c.1.12.3 77160 2dh2A 424 7.02e+00 1topA 162 7.14e+00 a.39.1.5 17223 2x6hA 696 7.19e+00 1q0rA 298 7.22e+00 c.69.1.28 95508 3b2yA 275 7.39e+00 2qeeA 437 7.45e+00 1c4oA 664 7.46e+00 1d2mA c.37.1.19 32415 c.37.1.19 32416 1ncx 162 7.58e+00 1ncx 2pi6A 361 7.66e+00 c.1.8.5 149501 d.26.3.1 149502 5csmA 256 7.81e+00 5csmA a.130.1.2 19494 2bvwA 362 7.90e+00 1bvwA c.6.1.1 30666 2x42A 721 7.97e+00 1bu5A 147 8.06e+00 5nul c.23.5.1 31155 3bz1B 510 8.23e+00 2zxiA 637 8.30e+00 1k7hA 476 8.45e+00 c.76.1.1 72101 1f4pA 147 8.48e+00 5nul c.23.5.1 59651 1j9eA 147 8.94e+00 c.23.5.1 62756 3cvzA 273 9.05e+00 1wovA 250 9.10e+00 a.132.1.1 121124 1o94A 729 9.14e+00 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 2rijA 387 9.39e+00 2zy5A 546 9.53e+00 2fyfA 398 9.64e+00 2pidA 356 9.80e+00 2w9mA 578 9.93e+00 2c7yA 404 9.97e+00 2qmiA 447 1.00e+01 2whqA 548 1.03e+01 2cbiA 594 1.05e+01 a.246.1.1 130179 c.1.8.10 130180 d.92.2.3 130181 1b5pA 385 1.06e+01 c.67.1.1 90403 3liiA 540 1.09e+01 2v5cA 594 1.09e+01 2dtxA 264 1.09e+01 1eluA 390 1.10e+01 1elqA c.67.1.3 34434 2zy4A 546 1.10e+01 1djqA 729 1.11e+01 2tmdA c.1.4.1 28614 c.3.1.1 30315 c.4.1.1 30600 1htyA 1015 1.11e+01 a.8.3.1 83064 b.30.5.6 83065 c.6.2.1 83066 3biqA 467 1.13e+01 2psoA 237 1.13e+01 d.129.3.2 149824 2j6vA 301 1.14e+01 1lwjA 441 1.14e+01 b.71.1.1 74303 c.1.8.1 74304 2vq7A 461 1.16e+01 2tmdA 729 1.17e+01 2tmdA c.1.4.1 28616 c.3.1.1 30317 c.4.1.1 30602 2b5dX 528 1.18e+01 a.8.3.3 127886 c.6.2.4 127887 3c0qA 301 1.18e+01 1elqA 390 1.18e+01 1elqA c.67.1.3 34436 1csmA 256 1.20e+01 5csmA a.130.1.2 19495 3khkA 544 1.21e+01 2qizA 982 1.21e+01 1tml 286 1.21e+01 1tml 3l6dA 306 1.25e+01 3bmxA 642 1.26e+01 3k9vA 482 1.27e+01 3a9sA 595 1.27e+01 1dbfA 127 1.31e+01 2chsA d.79.1.2 39761 2pmvA 399 1.31e+01 1rvgA 305 1.32e+01 c.1.10.2 97920 1nxcA 478 1.32e+01 a.102.2.1 92293 2e87A 357 1.33e+01 3cp2A 649 1.35e+01 1eu1A 780 1.35e+01 1dmr b.52.2.2 26903 c.81.1.1 35311 1jhfA 202 1.37e+01 a.4.5.2 63057 b.87.1.1 63058 3cf4A 807 1.38e+01 3ga4A 178 1.46e+01 2rg4A 216 1.48e+01 2q16A 219 1.49e+01 1tw6A 133 1.49e+01 g.52.1.1 112694 2i3hA 133 1.49e+01 g.52.1.1 137023 1oc7A 364 1.50e+01 c.6.1.1 86794 1t5oA 351 1.57e+01 c.124.1.5 106459 1wq3A 322 1.60e+01 1k7yA 577 1.62e+01 a.46.1.1 68272 c.23.6.1 68273 d.173.1.1 68274 2drvA 200 1.62e+01 3a9bA 395 1.64e+01 2nygA 273 1.67e+01 c.140.1.2 148514 3gwaA 365 1.71e+01 2ez2A 456 1.72e+01 2zxcA 646 1.73e+01 1j3nA 408 1.74e+01 c.95.1.1 84074 c.95.1.1 84075 2wyhA 923 1.77e+01 1dt6A 473 1.78e+01 1dt6A a.104.1.1 18977 1bvwA 360 1.79e+01 1bvwA c.6.1.1 30668 3ch3X 265 1.80e+01 3a64A 395 1.80e+01 3dmeA 369 1.81e+01 2zygA 480 1.81e+01 2pg0A 385 1.81e+01 1om2A 95 1.84e+01 1om2A a.23.4.1 16520 1bjwA 382 1.84e+01 1bjwA c.67.1.1 34349 1pmi 440 1.85e+01 1pmi 1pmiA 440 1.85e+01 b.82.1.3 28114 1rj9A 304 1.86e+01 a.24.13.1 97553 c.37.1.10 97554 2kpqA 100 1.88e+01 2zwsA 646 1.92e+01 2ebfX 746 1.99e+01 a.296.1.1 146766 c.150.1.2 146767 d.3.1.17 146768 1q2lA 939 1.99e+01 d.185.1.1 118731 d.185.1.1 118732 d.185.1.1 118733 d.185.1.1 118734 1k7kA 221 2.00e+01 c.51.4.1 72104 1aru 344 2.01e+01 1arv 3kvoA 346 2.01e+01 1wzdA 215 2.03e+01 a.132.1.1 121493 2b7oA 464 2.06e+01 c.1.10.8 128047 1ufaA 520 2.09e+01 a.8.3.3 99329 c.6.2.4 99330 3kzfA 317 2.21e+01 1arv 344 2.22e+01 1arv 3gwjA 674 2.23e+01 2afaA 425 2.24e+01 a.102.1.3 126668 2ow6A 1045 2.25e+01 a.8.3.1 149039 b.30.5.6 149040 c.6.2.1 149041 2z3qA 119 2.26e+01 a.26.1.2 154002 2wesA 511 2.27e+01 1qfxA 460 2.28e+01 1qfxA c.60.1.2 33994 1qcwA 410 2.33e+01 1gox c.1.4.1 28622 1hx0A 496 2.35e+01 b.71.1.1 61346 c.1.8.1 61347 1vquA 374 2.35e+01 1hzpA 335 2.40e+01 1hn9A c.95.1.2 61455 c.95.1.2 61456 2du3A 534 2.40e+01 1qfcA 306 2.43e+01 1uteA d.159.1.1 42077 1b78A 193 2.43e+01 1b78A c.51.4.1 33221 3hl5A 95 2.47e+01 1hjxA 362 2.48e+01 c.1.8.5 83512 d.26.3.1 83513 1h80A 464 2.51e+01 b.80.1.8 65714 1kbjA 412 2.51e+01 c.1.4.1 72280 1wyuB 474 2.51e+01 c.67.1.7 121453 1htjF 210 2.55e+01 1htjF a.91.1.1 61254 3m6wA 464 2.55e+01 1rwhA 757 2.58e+01 a.102.3.2 97984 b.24.1.1 97985 b.30.5.2 97986 2zb6A 481 2.59e+01 1flcB 175 2.64e+01 1flcB h.3.1.1 45716 1auk 489 2.65e+01 1auk 1aukA 489 2.65e+01 c.76.1.2 35030 1ox0A 430 2.66e+01 c.95.1.1 87495 c.95.1.1 87496 1qwnA 1045 2.66e+01 a.8.3.1 96487 b.30.5.6 96488 c.6.2.1 96489 1k1xA 659 2.66e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 2e4uA 555 2.67e+01 3hy0A 441 2.69e+01 1vp4A 425 2.70e+01 c.67.1.1 113935 2wwwA 349 2.70e+01 3fgqA 397 2.70e+01 1ei1A 391 2.72e+01 1aj6 d.14.1.3 37570 d.122.1.2 41104 3pmgA 561 2.72e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 2zblA 421 2.72e+01 2zbwA 335 2.74e+01 2it2A 200 2.76e+01 1zjaA 557 2.81e+01 1nc5A 373 2.87e+01 a.102.1.6 85548 3bcxA 437 2.92e+01 2a5yB 549 2.96e+01 a.4.5.80 144786 a.77.1.3 144787 c.37.1.20 144788 1g73C 121 2.98e+01 1g3fA g.52.1.1 45375 2qbuA 232 2.99e+01 1tmxA 293 3.07e+01 1cnzA 363 3.07e+01 1cnzA c.77.1.1 35061 2c0hA 353 3.08e+01 c.1.8.3 129594 3cgvA 397 3.11e+01 1jg1A 235 3.16e+01 c.66.1.7 66661 3a9zA 432 3.17e+01 1ht6A 405 3.17e+01 b.71.1.1 83629 c.1.8.1 83630 1rrvA 416 3.19e+01 c.87.1.5 105083 1b77A 228 3.21e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 3llqA 256 3.23e+01 2z5gA 387 3.25e+01 1exnA 290 3.25e+01 1exnA a.60.7.1 18088 c.120.1.2 33358 1f9xA 120 3.25e+01 1g3fA g.52.1.1 59748 2c8eE 211 3.27e+01 2k3nA 160 3.29e+01 1ut8A 291 3.30e+01 a.60.7.1 99908 c.120.1.2 99909 1kf6D 119 3.31e+01 f.21.2.2 72400 1qtqA 553 3.33e+01 1gtrA b.53.1.2 26940 c.26.1.1 31579 2ixsA 323 3.36e+01 2q00A 129 3.37e+01 3cesA 651 3.38e+01 2culA 232 3.42e+01 c.3.1.7 130813 1u6eA 335 3.42e+01 c.95.1.2 119568 c.95.1.2 119569 1gtrA 553 3.47e+01 1gtrA b.53.1.2 26939 c.26.1.1 31578 2zwaA 695 3.48e+01 3hmuA 472 3.50e+01 1a2xA 159 3.51e+01 1ncx a.39.1.5 17251 3b9qA 302 3.51e+01 2k3oA 129 3.52e+01 2oegA 505 3.52e+01 1pmd 675 3.55e+01 1pmd 3d6nB 291 3.59e+01 1upkA 341 3.59e+01 a.118.1.15 99758 3kkbA 130 3.59e+01 3c96A 415 3.61e+01 c.3.1.2 156122 d.16.1.2 156123 2ef5A 290 3.62e+01 1opr 213 3.63e+01 1opr 1avsA 90 3.64e+01 1cll a.39.1.5 17226 2c5wB 385 3.66e+01 e.3.1.1 129958 1zq9A 285 3.66e+01 c.66.1.24 125505 2bmaA 470 3.68e+01 1lea 84 3.71e+01 1lea 2fepA 289 3.72e+01 2yxnA 322 3.76e+01 3bqcA 335 3.76e+01 d.144.1.7 155497 1qazA 351 3.78e+01 1qazA a.102.3.1 18848 2q1zB 195 3.78e+01 2h5gA 463 3.80e+01 1l1yA 678 3.83e+01 a.102.1.2 73486 2dsjA 423 3.88e+01 1cm7A 363 3.90e+01 1cnzA c.77.1.1 35063 1ku0A 388 3.97e+01 c.69.1.18 72994 2ftxB 64 3.97e+01 d.300.1.2 134086 3ftbA 361 4.00e+01