# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gy8A 397 1.39e+00 c.2.1.2 83376 1rj9A 304 3.65e+00 a.24.13.1,c.37.1.10 97553,97554 2nvaA 372 5.00e+00 3ckjA 329 6.21e+00 1pcxA 810 7.12e+00 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 3i16A 427 7.66e+00 3crvA 551 8.27e+00 2a2fX 325 8.97e+00 2ivyA 101 1.26e+01 d.58.58.1 147817 2gzaA 361 1.28e+01 1jx2B 315 1.31e+01 c.37.1.8 67404 1zz1A 369 1.31e+01 3bc9A 599 1.36e+01 1vlwA 217 1.41e+01 c.1.10.1 108868 2pa6A 427 1.41e+01 3eweB 564 1.43e+01 2akzA 439 1.57e+01 c.1.11.1,d.54.1.1 126944,126945 1fmtA 314 1.70e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 2ixnA 310 1.88e+01 a.268.1.1 137777 2a11A 242 1.91e+01 2hyvA 308 2.05e+01 2f6hX 419 2.21e+01 2igsA 219 2.22e+01 d.2.1.11 147659 1s3jA 155 2.34e+01 a.4.5.28 98437 2v8qA 157 2.34e+01 d.129.6.2 152781 1w7bA 339 2.57e+01 a.65.1.1 114317 1khtA 192 2.60e+01 c.37.1.1 84401 2vd3A 289 2.65e+01 1olmA 403 2.67e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2hszA 243 2.73e+01 c.108.1.6 136726 2pt7A 330 2.83e+01 c.37.1.11 149834 3kolA 156 3.00e+01 1lroA 267 3.08e+01 c.1.10.4 78161 1g6oA 330 3.09e+01 1g6oA c.37.1.11 32430 1u14A 172 3.15e+01 c.51.4.3 107579 2nwrA 267 3.18e+01 2orwA 184 3.21e+01 1aunA 208 3.23e+01 b.25.1.1 23900 1oaoC 729 3.25e+01 e.26.1.3 86746 1iatA 557 3.37e+01 1dqrA c.80.1.2 62123 1uumA 372 3.39e+01 c.1.4.1 100010 1wa3A 205 3.41e+01 c.1.10.1 120802 1or3A 165 3.44e+01 1nfn a.24.1.1 16522 3k5wA 475 3.44e+01 2pyyA 228 3.45e+01 6mhtA 327 3.45e+01 6mhtA c.66.1.26 34226 1i4nA 251 3.48e+01 c.1.2.4 71114 3krnA 222 3.51e+01 1lycA 343 3.51e+01 a.93.1.1 74344 2r91A 286 3.57e+01 1jbaA 204 3.58e+01 1rec a.39.1.5 17330 1w3iA 293 3.61e+01 c.1.10.1 109152 3ca8A 266 3.71e+01 2o7iA 592 3.74e+01 1mml 265 3.89e+01 1mml 1mmlA 265 3.89e+01 e.8.1.2 43015 1b68A 191 3.91e+01 1nfn a.24.1.1 59076 1pe1A 267 3.93e+01 c.1.10.4 94591 1o60A 292 3.96e+01 c.1.10.4 92532 3brjA 175 3.98e+01 a.285.1.1 155511 3i04M 728 3.99e+01 2nw2B 243 4.01e+01 2nyvA 222 4.04e+01 3bjuA 521 4.13e+01 1nfn 191 4.22e+01 1nfn 3fsiA 255 4.26e+01 2felA 359 4.30e+01 2zvfA 171 4.32e+01 1bz4A 144 4.41e+01 1nfn a.24.1.1 16521 1aroP 883 4.42e+01 1cezA e.8.1.3 43112 2qv3A 457 4.43e+01 1dq3A 454 4.47e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1iyxA 432 4.59e+01 c.1.11.1,d.54.1.1 83815,83816 3e0iA 267 4.59e+01 1ud0A 113 4.63e+01 a.8.4.1 99198 1mjgM 729 4.67e+01 e.26.1.3 79204 1et0A 269 4.71e+01 1et0A e.17.1.1 43289 3a9zA 432 4.73e+01 1wmmA 145 4.74e+01 b.122.1.8 121049 1d3gA 367 4.83e+01 1d3gA c.1.4.1 28600 2c7pA 327 4.86e+01 c.66.1.26 130080 1iicA 422 4.87e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1gs9A 165 4.89e+01 a.24.1.1 83313 1uzeA 589 4.95e+01 d.92.1.5 108174 1s0pA 176 4.97e+01 a.192.1.1 98300 2ef0A 301 5.05e+01 2v1lA 148 5.20e+01 1zhaA 267 5.22e+01 1pkoA 139 5.28e+01 b.1.1.1 88147 1ru3A 732 5.31e+01 e.26.1.3 97835 1al3 324 5.33e+01 1al3 1al3A 324 5.33e+01 c.94.1.1 35835 1efyA 350 5.41e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 2qddA 378 5.45e+01 2i2wA 212 5.55e+01 1mxsA 225 5.58e+01 c.1.10.1 91494 1cnv 299 5.59e+01 1cnv 1cnvA 299 5.59e+01 c.1.8.5 28989 2bmbA 545 5.63e+01 1or4A 178 5.64e+01 a.1.1.2 93447 2e3bA 344 5.64e+01 a.93.1.1 132024 3nul 130 5.64e+01 3nul 3nulA 130 5.64e+01 d.110.1.1 40891 1aru 344 5.65e+01 1arv 1arv 344 5.65e+01 1arv 3g8rA 350 5.68e+01 2h5nA 133 5.71e+01 a.287.1.2 147227 2c7aA 78 5.74e+01 1ae9A 179 5.81e+01 1ae9A d.163.1.1 42153 1fsz 372 5.84e+01 1fsz 1mswD 883 5.91e+01 e.8.1.3 79427 1rjdA 334 5.94e+01 c.66.1.37 97558 2r3bA 310 6.03e+01 3l0gA 300 6.19e+01 1d9eA 284 6.20e+01 1d9eA c.1.10.4 29195 1nxhA 126 6.21e+01 a.200.1.1 92300 2b9eA 303 6.21e+01 c.66.1.38 128124 1yrgA 385 6.40e+01 1yrgA c.10.1.2 30854 3m0zA 249 6.42e+01 2fncA 381 6.45e+01 1latA 82 6.46e+01 2nllB g.39.1.2 45122 3e5jA 403 6.48e+01 3do7A 296 6.49e+01 1b7gO 340 6.50e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 3g2gA 533 6.53e+01 3lmkA 492 6.60e+01 3h63A 315 6.67e+01 2rcyA 262 6.74e+01 2nuwA 288 6.79e+01 3fvdA 378 6.81e+01 2hd9A 145 6.95e+01 b.122.1.8 147268 1ab5A 125 6.99e+01 3chy c.23.1.1 31056 2d4xA 248 7.05e+01 1jbeA 128 7.11e+01 3chy c.23.1.1 62845 2i62A 265 7.17e+01 1mvwA 840 7.18e+01 i.15.1.1 79523 3gjwA 350 7.33e+01 1zu0A 529 7.40e+01 3inpA 246 7.42e+01 1gw1A 376 7.55e+01 c.1.8.3 76361 3c8tA 451 7.57e+01 1q20A 299 7.68e+01 c.37.1.5 95616 2j6lA 500 7.78e+01 1g8xA 1010 7.86e+01 1lvk k.1.1.1 46378 2dyuA 334 7.88e+01 1smlA 269 7.90e+01 1smlA d.157.1.1 42053 3lerA 301 7.98e+01