# List of top-scoring protein chains for T0529.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2qq6A 410 4.73e+00 3krnA 222 6.91e+00 2gexA 152 1.04e+01 d.17.4.9 147112 1c3pA 375 1.17e+01 1c3pA c.42.1.2 32606 1twfF 155 1.20e+01 a.143.1.2 112731 2rgrA 759 1.39e+01 e.11.1.1 152021 1bjtA 793 1.40e+01 e.11.1.1 43249 2uycA 327 1.54e+01 2uz4A 327 1.80e+01 2ogtA 498 1.94e+01 2i9kA 327 2.07e+01 2z6aA 327 2.14e+01 2zcjA 327 2.23e+01 2c7pA 327 2.24e+01 c.66.1.26 130080 2uyhA 327 2.26e+01 1svuA 327 2.30e+01 c.66.1.26 106052 2gl9A 151 2.31e+01 2ppgA 399 2.35e+01 2gboA 104 2.35e+01 a.23.6.1 134923 1c3rA 375 2.39e+01 1c3pA c.42.1.2 32607 2z6uA 327 2.40e+01 2c7rA 327 2.52e+01 c.66.1.26 130082 2ds4A 113 2.72e+01 2z6qA 327 2.84e+01 2i3sA 349 3.03e+01 b.69.4.2 137031 2i2xA 461 3.03e+01 1u4cA 349 3.04e+01 b.69.4.2 107666 1yfqA 342 3.04e+01 b.69.4.2 116680 2i3tA 341 3.05e+01 b.69.4.2 137034 2buwB 241 3.15e+01 b.3.6.1 145016 1gxrA 337 3.33e+01 b.69.4.1 70722 2zkre 192 3.69e+01 2el7A 337 3.71e+01 1latA 82 3.75e+01 2nllB g.39.1.2 45122 2nqaA 326 3.76e+01 2burB 241 4.04e+01 b.3.6.1 129228 3a0bA 344 4.11e+01 3js9A 156 4.13e+01 1izlA 360 4.15e+01 i.5.1.1 76994 9gafA 295 4.17e+01 1apyA d.153.1.5 42008 3bz1A 344 4.21e+01 2geyA 158 4.23e+01 d.17.4.9 147114 1w5cA 360 4.24e+01 i.5.1.1 114215 2cfbA 411 4.29e+01 c.67.1.4 130368 3gzdA 440 4.30e+01 2cqlA 100 4.52e+01 d.141.1.1 146421 3bc9A 599 4.53e+01 3lq2A 886 4.64e+01 9gacA 295 4.81e+01 1apyA d.153.1.5 42010 1szuA 426 4.85e+01 c.67.1.4 119094 1p4kA 295 4.88e+01 d.153.1.5 87772 9gaaA 295 5.03e+01 1apyA d.153.1.5 42014 2w7sA 200 5.28e+01 1szkA 426 5.33e+01 c.67.1.4 119086 3ffkA 377 5.39e+01 3fuqA 417 5.47e+01 3frmA 254 5.49e+01 1s3jA 155 5.51e+01 a.4.5.28 98437 2g99A 308 5.52e+01 1j3kC 328 5.53e+01 d.117.1.1 84072 2g9aA 311 5.53e+01 2h6nA 312 5.53e+01 2o9kA 313 5.54e+01 2h14A 317 5.56e+01 2gnqA 336 5.56e+01 3emhA 318 5.56e+01 3fnaA 149 5.59e+01 2h9lA 329 5.59e+01 3lplA 886 5.62e+01 2qtcA 886 5.63e+01 c.36.1.6,c.36.1.10,c.48.1.1 151343,151344,151345 2ieaA 886 5.64e+01 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1szsA 426 5.72e+01 c.67.1.4 119090 1sffA 426 5.74e+01 c.67.1.4 105482 1q9jA 422 6.20e+01 c.43.1.2,c.43.1.2 104590,104591 1twfA 1733 6.36e+01 e.29.1.2 112725 2ogsA 498 6.40e+01 1jl5A 454 6.49e+01 c.10.2.6 66830 2f33A 263 6.53e+01 3ckjA 329 6.99e+01 2c7aA 78 7.21e+01 3ffnA 782 7.21e+01 3f69A 311 7.24e+01 2pbiB 354 7.32e+01 3ek1A 504 7.49e+01 1c1kA 217 7.53e+01 1c1kA a.120.1.1 19239 2qmiA 447 7.61e+01 2q0bA 324 7.62e+01 1nexB 464 7.77e+01 a.158.1.1,b.69.4.1 80443,80444 2sspE 223 7.91e+01 3eugA c.18.1.1 31012