# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gboA 104 1.14e-01 a.23.6.1 134923 3lofA 113 1.36e+00 2ivyA 101 1.44e+00 d.58.58.1 147817 2bzbA 62 2.00e+00 a.30.7.1 129556 6mhtA 327 2.00e+00 6mhtA c.66.1.26 34226 1pcxA 810 2.62e+00 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1mxsA 225 2.81e+00 c.1.10.1 91494 2hxsA 178 2.95e+00 2vd3A 289 3.62e+00 3lvuA 258 3.74e+00 2c7pA 327 4.24e+00 c.66.1.26 130080 2ovrB 445 4.29e+00 a.158.1.1,b.69.4.1 145735,145736 1kfcA 268 4.57e+00 c.1.2.4 77371 3krnA 222 4.72e+00 3dlcA 219 4.87e+00 1fjrA 195 5.71e+00 1fjrA b.102.1.1 59855 2oc5A 244 5.73e+00 a.25.1.6 148720 1g73A 162 6.01e+00 1fewA a.7.4.1 16332 1i84S 1184 6.25e+00 1lvk i.15.1.1 61940 2tysA 268 6.43e+00 2tysA c.1.2.4 28572 3hnwA 138 7.45e+00 1gd2E 70 7.61e+00 1gd2G h.1.3.1 45528 1iseA 185 8.27e+00 d.67.3.1 90691 2ev0A 142 8.70e+00 a.4.5.24,a.76.1.1 132413,132414 1tafB 70 8.75e+00 1tafB a.22.1.3 16482 2ke4A 98 9.31e+00 3crvA 551 9.92e+00 1twfF 155 9.93e+00 a.143.1.2 112731 1ek8A 185 1.02e+01 1ek8A d.67.3.1 59444 1yfqA 342 1.03e+01 b.69.4.2 116680 1x4tA 92 1.04e+01 a.2.15.1 121698 1t3wA 148 1.11e+01 a.236.1.1 112233 1vhcA 224 1.16e+01 c.1.10.1 100661 1on2A 142 1.16e+01 a.4.5.24,a.76.1.1 87103,87104 1gxrA 337 1.27e+01 b.69.4.1 70722 2etsA 128 1.29e+01 a.24.26.1 132371 2p32A 120 1.30e+01 1s0pA 176 1.30e+01 a.192.1.1 98300 3dagA 358 1.31e+01 1xq8A 140 1.33e+01 h.7.1.1 115834 1ypxA 375 1.36e+01 1l9vA 317 1.38e+01 d.13.2.1,d.216.1.1 73760,73761 3bc9A 599 1.50e+01 1wzaA 488 1.50e+01 b.71.1.1,c.1.8.1 121489,121490 1wrdA 103 1.57e+01 a.7.8.1 144565 3greA 437 1.60e+01 2b0jA 358 1.64e+01 a.100.1.11,c.2.1.6 127639,127640 1wqgA 185 1.66e+01 d.67.3.1 145821 1dowA 205 1.71e+01 1dovA a.24.9.1 16626 3fk4A 414 1.72e+01 3ilkA 244 1.74e+01 9gafA 295 1.75e+01 1apyA d.153.1.5 42008 2novA 496 1.81e+01 3f47A 358 1.82e+01 2ql2B 60 1.83e+01 1d6bA 42 1.84e+01 1b8wA g.9.1.1 44594 2qikA 285 1.86e+01 2kl6A 114 1.87e+01 1p4kA 295 1.94e+01 d.153.1.5 87772 1fo1A 271 1.99e+01 1fo1A c.10.2.3,d.58.7.2 30869,39213 2nnnA 140 2.05e+01 2pbiB 354 2.12e+01 3h87C 73 2.17e+01 1is1A 185 2.19e+01 d.67.3.1 83704 1i4nA 251 2.19e+01 c.1.2.4 71114 2r7jA 317 2.29e+01 d.13.2.1,d.216.1.1 151645,151646 2d4xA 248 2.34e+01 1qnf 484 2.48e+01 1qnf 2d4yA 463 2.50e+01 2qwwA 154 2.55e+01 2i6vA 87 2.60e+01 b.36.1.5 147530 1tezA 474 2.73e+01 a.99.1.1,c.28.1.1 112409,112410 1s94A 180 2.80e+01 a.47.2.1 98738 2zosA 249 2.80e+01 2h14A 317 2.88e+01 1yyvA 131 2.95e+01 a.4.5.69 124254 1gsa 316 3.03e+01 1gsa 1gsaA 316 3.04e+01 c.30.1.3,d.142.1.1 31718,41477 2odmA 91 3.04e+01 1sknP 92 3.06e+01 1sknP a.37.1.1 17127 1owlA 484 3.12e+01 a.99.1.1,c.28.1.1 93647,93648 2rc5A 314 3.15e+01 1u4cA 349 3.24e+01 b.69.4.2 107666 1u5pA 216 3.26e+01 a.7.1.1,a.7.1.1 113046,113047 1xjzA 233 3.29e+01 a.132.1.1 122049 3emhA 318 3.29e+01 1jfiA 98 3.30e+01 1jfiA a.22.1.3 62936 1zw0A 66 3.36e+01 2kbiA 97 3.40e+01 3ip4C 100 3.41e+01 1no5A 114 3.43e+01 d.218.1.5 92014 1oqvA 192 3.48e+01 d.24.1.2 87320 1tiiC 53 3.49e+01 1tiiC 1fmtA 314 3.53e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 2gnqA 336 3.54e+01 1by0A 27 3.56e+01 h.4.6.1 45795 2b9eA 303 3.57e+01 c.66.1.38 128124 1pl8A 356 3.60e+01 b.35.1.2,c.2.1.1 94878,94879 1sedA 117 3.63e+01 a.219.1.1 105449 1dkzA 219 3.69e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1jb7B 260 3.69e+01 1otcB b.40.4.3 62839 1hy0A 466 3.72e+01 1auwA a.127.1.1 61392 2nuwA 288 3.75e+01 1qhhC 115 3.76e+01 1pjr 1p22A 435 3.79e+01 a.158.1.1,b.69.4.1 87715,87716 1w85A 368 3.80e+01 c.36.1.11 114335 1erjA 393 3.89e+01 1erjA b.69.4.1 27660 1wzcA 249 4.09e+01 c.108.1.10 121491 1zmtA 254 4.12e+01 c.2.1.2 125363 1ydnA 295 4.16e+01 1vgjA 184 4.25e+01 2nw2B 243 4.26e+01 2gd5A 179 4.33e+01 1pwxA 254 4.34e+01 c.2.1.2 95262 2d69A 430 4.36e+01 c.1.14.1,d.58.9.1 131292,131293 1lvfA 110 4.37e+01 a.47.2.1 74280 1tt8A 164 4.48e+01 d.190.1.1 112635 1nxhA 126 4.51e+01 a.200.1.1 92300 2og5A 357 4.57e+01 3a1gA 80 4.58e+01 3cu5A 141 4.59e+01 1g4yB 101 4.64e+01 1g4yB f.15.1.1 60251 1zkeA 83 4.71e+01 a.30.6.1 125186 3gfjA 146 4.74e+01 3ma5A 100 4.79e+01 2f6mA 65 4.88e+01 a.2.17.1 133051 1vr5A 547 4.90e+01 c.94.1.1 120437 1jadA 251 4.98e+01 h.4.10.1 66461 1lj9A 144 5.02e+01 a.4.5.28 78035 3caxA 369 5.03e+01 2gxgA 146 5.06e+01 1lb2B 84 5.33e+01 a.60.3.1 77871 2ec4A 178 5.57e+01 1khtA 192 5.67e+01 c.37.1.1 84401 1wr6A 111 5.70e+01 a.7.8.1 144561 1m0dA 138 5.79e+01 c.52.1.17 74354 2oemA 413 5.85e+01 2axcA 264 5.86e+01 3a8uX 449 5.87e+01 2ri7A 174 5.88e+01 1x79B 112 5.89e+01 h.1.27.2 114925 1yemA 179 5.93e+01 d.63.1.2 116646 1t3jA 96 5.99e+01 h.4.16.1 106356 3e8tA 220 6.17e+01 1r94A 118 6.18e+01 b.124.1.1 97251 1nexB 464 6.20e+01 a.158.1.1,b.69.4.1 80443,80444 1sgwA 214 6.22e+01 c.37.1.12 105541 2wwxA 175 6.24e+01 3d9rA 135 6.25e+01 d.17.4.27 157459 1wnaA 131 6.29e+01 d.319.1.1 121091 3fgxA 114 6.37e+01 2zttA 79 6.39e+01 1pl4A 198 6.44e+01 a.2.11.1,d.44.1.1 94854,94855 2nvaA 372 6.47e+01 3kovA 90 6.61e+01 1tjvA 474 6.61e+01 a.127.1.1 107054 2z3yA 662 6.62e+01 a.4.1.18,c.3.1.2,d.16.1.5 154024,154025,154026 3gflA 146 6.63e+01 2q3sA 206 6.65e+01 c.55.3.5 139802 3dnpA 290 6.70e+01 2ic7A 185 6.75e+01 3bn1A 373 6.78e+01 1wj7A 104 6.80e+01 a.5.2.1 120976 2nyiA 195 6.82e+01 2fgeA 995 6.84e+01 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 3kyhA 310 6.86e+01 2q8vA 63 6.87e+01 3iduA 127 6.88e+01 1hl2A 297 6.93e+01 c.1.10.1 83581 2d27A 149 6.98e+01 d.52.10.1 146449 3k21A 191 6.99e+01 1n0nA 199 7.00e+01 a.2.11.1,d.44.1.1 79750,79751 1ud0A 113 7.01e+01 a.8.4.1 99198 3gfmA 146 7.02e+01 2zhgA 154 7.03e+01 2ihyA 279 7.08e+01 3cexA 172 7.09e+01 3kb2A 173 7.10e+01 3k12A 122 7.13e+01 1wdcB 156 7.16e+01 1wdcB a.39.1.5 17302 1fzrA 138 7.22e+01 1fzrA c.52.1.17 33336 3h0gF 142 7.24e+01 3crnA 132 7.27e+01 3hi9A 84 7.41e+01 3dr7A 391 7.42e+01 1k94A 165 7.44e+01 a.39.1.8 68333 2kavA 129 7.49e+01 1wmiB 67 7.50e+01 a.137.13.1 121046 1z3eB 73 7.74e+01 a.60.3.1 124401 1k7wA 468 7.75e+01 a.127.1.1 72130 1utuA 108 7.79e+01 a.283.1.1 145784 2b4vA 468 7.79e+01 a.160.1.4,d.218.1.10 127864,127865 1rykA 69 7.81e+01 a.60.11.1 98105 1wh5A 80 7.82e+01 a.4.1.1 114633 1wc2A 181 7.86e+01 b.52.1.1 145817 2nptB 100 7.93e+01 d.15.2.2 138449 1tr9A 341 8.00e+01 c.1.8.7 112617