# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3i16A 427 2.31e+00 1gy8A 397 3.17e+00 c.2.1.2 83376 2btuA 346 4.68e+00 2vd3A 289 5.21e+00 3ckjA 329 5.50e+00 3crvA 551 5.57e+00 2nvaA 372 5.91e+00 1o60A 292 7.19e+00 c.1.10.4 92532 3eweB 564 7.67e+00 3bc9A 599 9.99e+00 2ivyA 101 1.08e+01 d.58.58.1 147817 1or3A 165 1.09e+01 1nfn a.24.1.1 16522 2pa6A 427 1.29e+01 2ip2A 334 1.29e+01 1zz1A 369 1.38e+01 1pcxA 810 1.44e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 3i04M 728 1.51e+01 1ru3A 732 1.53e+01 e.26.1.3 97835 2gzaA 361 1.53e+01 2a2fX 325 1.58e+01 3lerA 301 1.58e+01 1oaoC 729 1.59e+01 e.26.1.3 86746 2hyvA 308 1.59e+01 2akzA 439 1.66e+01 c.1.11.1,d.54.1.1 126944,126945 1uzeA 589 1.68e+01 d.92.1.5 108174 1s3jA 155 1.72e+01 a.4.5.28 98437 3a1jC 263 1.74e+01 1iyxA 432 1.75e+01 c.1.11.1,d.54.1.1 83815,83816 2pt7A 330 1.85e+01 c.37.1.11 149834 1khtA 192 1.86e+01 c.37.1.1 84401 2r91A 286 1.88e+01 1b68A 191 1.93e+01 1nfn a.24.1.1 59076 1fmtA 314 1.94e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 2ixnA 310 1.94e+01 a.268.1.1 137777 1ghsA 306 1.98e+01 1aq0A c.1.8.3 28840 3brjA 175 1.98e+01 a.285.1.1 155511 1ud0A 113 2.00e+01 a.8.4.1 99198 2f6hX 419 2.04e+01 1g6oA 330 2.06e+01 1g6oA c.37.1.11 32430 2zumA 458 2.07e+01 1w3iA 293 2.08e+01 c.1.10.1 109152 3g65B 282 2.16e+01 2qddA 378 2.18e+01 3e9aA 286 2.21e+01 1dq3A 454 2.26e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 3fvdA 378 2.37e+01 2cygA 312 2.37e+01 c.1.8.3 131025 2a11A 242 2.40e+01 3cuqA 234 2.42e+01 3i0pA 365 2.57e+01 1gs9A 165 2.63e+01 a.24.1.1 83313 3bm3A 272 2.76e+01 1zhaA 267 2.77e+01 3g2gA 533 2.80e+01 2nuwA 288 2.80e+01 1rj9A 304 2.97e+01 a.24.13.1,c.37.1.10 97553,97554 1j5yA 187 3.17e+01 a.4.5.1,d.94.2.1 71592,71593 1w7bA 339 3.18e+01 a.65.1.1 114317 2pyyA 228 3.28e+01 2nnnA 140 3.30e+01 2qikA 285 3.31e+01 1iicA 422 3.47e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1u2zA 433 3.49e+01 c.66.1.31 107626 2dyoA 297 3.50e+01 2nwrA 267 3.61e+01 1pe1A 267 3.62e+01 c.1.10.4 94591 2h5nA 133 3.63e+01 a.287.1.2 147227 2kl6A 114 3.63e+01 1wehA 171 3.72e+01 c.129.1.1 114551 3kolA 156 3.76e+01 2zvfA 171 3.82e+01 6mhtA 327 3.84e+01 6mhtA c.66.1.26 34226 2felA 359 3.85e+01 1wp1A 474 3.87e+01 f.5.1.1 114778 1wxqA 397 3.89e+01 c.37.1.8,d.15.10.2 121406,121407 1rrmA 386 4.05e+01 e.22.1.2 105081 1or4A 178 4.08e+01 a.1.1.2 93447 1lroA 267 4.12e+01 c.1.10.4 78161 2aorA 223 4.12e+01 2p1mB 594 4.20e+01 2i2wA 212 4.27e+01 1uumA 372 4.31e+01 c.1.4.1 100010 2ef0A 301 4.31e+01 1hrkA 359 4.34e+01 1hrkA c.92.1.1 61228 2bzbA 62 4.35e+01 a.30.7.1 129556 1u14A 172 4.38e+01 c.51.4.3 107579 2ehhA 294 4.42e+01 2r8wA 332 4.43e+01 1g8xA 1010 4.48e+01 1lvk k.1.1.1 46378 2c7pA 327 4.51e+01 c.66.1.26 130080 2g50A 530 4.55e+01 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1rjdA 334 4.61e+01 c.66.1.37 97558 2i62A 265 4.64e+01 1vlwA 217 4.89e+01 c.1.10.1 108868 3iduA 127 4.90e+01 3gr4A 550 4.94e+01 1vcrA 232 5.03e+01 i.5.1.1 100560 3e0iA 267 5.09e+01 1efyA 350 5.26e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 1qhdA 398 5.27e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 2qh9A 184 5.29e+01 2pefA 373 5.48e+01 3h0gF 142 5.49e+01 1y1xA 191 5.56e+01 a.39.1.8 116374 2d4xA 248 5.67e+01 1dowA 205 5.77e+01 1dovA a.24.9.1 16626 2j6lA 500 5.80e+01 1i4nA 251 5.81e+01 c.1.2.4 71114 1zu0A 529 5.82e+01 2o7iA 592 5.84e+01 2zmeA 258 5.84e+01 1t5aA 567 5.84e+01 2r3bA 310 5.87e+01 3fo3A 525 5.87e+01 1xrsA 516 5.88e+01 c.1.19.4 115883 2orwA 184 5.91e+01 2ot4A 525 6.02e+01 2v8qA 157 6.03e+01 d.129.6.2 152781 1othA 321 6.03e+01 1othA c.78.1.1,c.78.1.1 35260,35261 2pocA 367 6.14e+01 3inpA 246 6.17e+01 1wa3A 205 6.33e+01 c.1.10.1 120802 2nw2B 243 6.42e+01 1w6tA 444 6.43e+01 c.1.11.1,d.54.1.1 120670,120671 2hzmA 212 6.44e+01 3d5kA 474 6.44e+01 1r85A 379 6.47e+01 c.1.8.3 104839 2o0bA 450 6.52e+01 2qv3A 457 6.60e+01 2pa2A 151 6.62e+01 d.41.4.1 149337 2vh4A 381 6.71e+01 1phkA 298 6.75e+01 d.144.1.7 41635 1a49A 530 6.78e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 1w53A 84 6.81e+01 a.186.1.2 109175 1ixmA 192 6.81e+01 1ixmA d.123.1.1 41114 3gjwA 350 6.82e+01 2vgiA 528 6.85e+01 1jm6A 407 6.90e+01 a.29.5.1,d.122.1.4 66876,66877 3b46A 447 6.90e+01 2goyA 275 6.90e+01 1b7gO 340 6.99e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1sjdA 368 7.05e+01 c.1.11.2,d.54.1.1 105632,105633 3k31A 296 7.14e+01 1twfF 155 7.14e+01 a.143.1.2 112731 2b9eA 303 7.17e+01 c.66.1.38 128124 3krnA 222 7.20e+01 1zu4A 320 7.24e+01 1yrgA 385 7.25e+01 1yrgA c.10.1.2 30854 1x42A 232 7.29e+01 c.108.1.1 121677 1nxhA 126 7.31e+01 a.200.1.1 92300 1y4oA 104 7.32e+01 d.110.7.1 145901 2p10A 286 7.37e+01 c.1.12.9 149144 2hz5A 106 7.42e+01 d.110.7.1 147460 1q20A 299 7.46e+01 c.37.1.5 95616 1g5aA 628 7.55e+01 b.71.1.1,c.1.8.1 65152,65153 1pot 325 7.61e+01 1pot 1potA 325 7.61e+01 c.94.1.1 35807 1xknA 355 7.69e+01 d.126.1.6 115414 2sqcA 631 7.71e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1go3F 107 7.73e+01 a.60.8.2 65407 2bmbA 545 7.78e+01 1kyqA 274 7.95e+01 c.2.1.11,e.37.1.1 73281,73282